RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ACTN3Q08043 901 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-206ENST00000579558 TECRLQ5HYJ1 363 aa22.48■■□□□ 1.19
SHMT1-206ENST00000579558 PLAG1Q6DJT9 500 aa22.48■■□□□ 1.19
SHMT1-206ENST00000579558 TRIM40Q6P9F5 258 aa22.48■■□□□ 1.19
SHMT1-206ENST00000579558 PAPD4Q6PIY7 484 aaKnown RBP22.48■■□□□ 1.19
SHMT1-206ENST00000579558 TRMT10CQ7L0Y3 403 aaKnown RBP22.48■■□□□ 1.19
SHMT1-206ENST00000579558 TEX9Q8N6V9 391 aa22.48■■□□□ 1.19
SHMT1-206ENST00000579558 OR2L5Q8NG80 312 aa22.48■■□□□ 1.19
SHMT1-206ENST00000579558 TRIM49D1C9J1S8 452 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 PRMT3O60678 531 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 TBX6O95947 436 aaPredicted RBP22.47■■□□□ 1.19
SHMT1-206ENST00000579558 ABHD2P08910 425 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 PLA2G16P53816 162 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 OR4D2P58180 307 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 E2F2Q14209 437 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 NAA30Q147X3 362 aaPredicted RBP22.47■■□□□ 1.19
SHMT1-206ENST00000579558 ADPRMQ3LIE5 342 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 B3GNTL1Q67FW5 361 aaPredicted RBP22.47■■□□□ 1.19
SHMT1-206ENST00000579558 MED27Q6P2C8 311 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 QSOX2Q6ZRP7 698 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 CISD2Q8N5K1 135 aaKnown RBP22.47■■□□□ 1.19
SHMT1-206ENST00000579558 GALNT11Q8NCW6 608 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 LRRN4CLQ8ND94 238 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 UBE2E3Q969T4 207 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 SNRNP40Q96DI7 357 aaKnown RBP22.47■■□□□ 1.19
SHMT1-206ENST00000579558 PTCHD1Q96NR3 888 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 LPAR4Q99677 370 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 ZNF358Q9NW07 568 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 PCDHGA10Q9Y5H3 936 aa22.47■■□□□ 1.19
SHMT1-206ENST00000579558 SHANK1Q9Y566 2161 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 DYTNA2CJ06 578 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 FAM227AF5H4B4 570 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 KLK8O60259 260 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 PCNAP12004 261 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 ARG2P78540 354 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 BTG2P78543 158 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 PCDH1Q08174 1060 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 ZNF169Q14929 603 aaPredicted RBP22.46■■□□□ 1.19
SHMT1-206ENST00000579558 EXT1Q16394 746 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 SCYL1Q96KG9 808 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 MAGEB10Q96LZ2 347 aaPredicted RBP22.46■■□□□ 1.19
SHMT1-206ENST00000579558 QRFPRQ96P65 431 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 NPLQ9BXD5 320 aaPredicted RBP22.46■■□□□ 1.19
SHMT1-206ENST00000579558 COPS7BQ9H9Q2 264 aaPredicted RBP22.46■■□□□ 1.19
SHMT1-206ENST00000579558 CNTRLQ7Z7A1 2325 aa22.46■■□□□ 1.19
SHMT1-206ENST00000579558 LRRC14BA6NHZ5 514 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 RIPK2O43353 540 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 B3GALT2O43825 422 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 RBP1P09455 135 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 FAM153BP0C7A2 387 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 TGM3Q08188 693 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 RUNX2Q13950 521 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 PCBP2Q15366 365 aaKnown RBP eCLIP22.45■■□□□ 1.18
SHMT1-206ENST00000579558 TLR1Q15399 786 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 TSNAXIP1Q2TAA8 658 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 FAM153CQ494X1 144 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 GRHL2Q6ISB3 625 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 ABHD17CQ6PCB6 329 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 CATSPER1Q8NEC5 780 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 ZNF473Q8WTR7 871 aaKnown RBP22.45■■□□□ 1.18
SHMT1-206ENST00000579558 C19orf60Q96EN9 201 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 F2RL3Q96RI0 385 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 SLC29A3Q9BZD2 475 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 PRDM9Q9NQV7 894 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 PLA2G3Q9NZ20 509 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 TNPO3Q9Y5L0 923 aaKnown RBP22.45■■□□□ 1.18
SHMT1-206ENST00000579558 CPAMD8Q8IZJ3 1885 aa22.45■■□□□ 1.18
SHMT1-206ENST00000579558 A8MUI8 341 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 SNRPAP09012 282 aaKnown RBP22.44■■□□□ 1.18
SHMT1-206ENST00000579558 COL6A2P12110 1019 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 MAOAP21397 527 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 GNLYP22749 145 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 UQCRFS1P47985 274 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 MTTPP55157 894 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 LGSNQ5TDP6 509 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 ABHD17BQ5VST6 288 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 MYLK4Q86YV6 388 aaPredicted RBP22.44■■□□□ 1.18
SHMT1-206ENST00000579558 LAS2Q8IYD9 372 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 CYP4X1Q8N118 509 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 ARMC2Q8NEN0 867 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 M1APQ8TC57 530 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 SERINC2Q96SA4 455 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 MS4A8Q9BY19 250 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 KCNK13Q9HB14 408 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 ASF1BQ9NVP2 202 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 XPR1Q9UBH6 696 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 TEKT2Q9UIF3 430 aa22.44■■□□□ 1.18
SHMT1-206ENST00000579558 COPG1Q9Y678 874 aaKnown RBP22.44■■□□□ 1.18
SHMT1-206ENST00000579558 SIX3O95343 332 aaPredicted RBP22.43■■□□□ 1.18
SHMT1-206ENST00000579558 CERS1P27544 350 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 SERPINB1P30740 379 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 TSFMP43897 325 aaKnown RBP22.43■■□□□ 1.18
SHMT1-206ENST00000579558 RAB38P57729 211 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 ZNF33BQ06732 778 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 GTF2H2Q13888 395 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 GTF2H2CQ6P1K8 395 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 GOLGA7Q7Z5G4 137 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 GSPT2Q8IYD1 628 aaKnown RBP22.43■■□□□ 1.18
SHMT1-206ENST00000579558 PTGR2Q8N8N7 351 aaPredicted RBP22.43■■□□□ 1.18
SHMT1-206ENST00000579558 SRFBP1Q8NEF9 429 aaKnown RBP22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms