RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ARHGAP1Q07960 439 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 PLA2G7Q13093 441 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 CUL3Q13618 768 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 LAMB3Q13751 1172 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 CAVIN4Q5BKX8 364 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 FIP1L1Q6UN15 594 aaKnown RBP5.44□□□□□ -1.54
VPS53-219ENST00000576019 DLEU7Q6UYE1 221 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 B3GLCTQ6Y288 498 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 ZNF517Q6ZMY9 492 aaPredicted RBP5.44□□□□□ -1.54
VPS53-219ENST00000576019 FAM114A1Q8IWE2 563 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 DSELQ8IZU8 1212 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 RBFAQ8N0V3 343 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 RASGEF1AQ8N9B8 481 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 PAPD5Q8NDF8 572 aaKnown RBP5.44□□□□□ -1.54
VPS53-219ENST00000576019 ACER1Q8TDN7 264 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 ACTRT2Q8TDY3 377 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 COQ10AQ96MF6 247 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 ZPBPQ9BS86 351 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 ZSCAN5AQ9BUG6 496 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 MSTO1Q9BUK6 570 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 SLC2A11Q9BYW1 496 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 B3GNT4Q9C0J1 378 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 SLC39A8Q9C0K1 460 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 RMND5AQ9H871 391 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 MAGEF1Q9HAY2 307 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 HYPKQ9NX55 129 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 CDC14AQ9UNH5 594 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 FOXA2Q9Y261 457 aaPredicted RBP5.44□□□□□ -1.54
VPS53-219ENST00000576019 GRIP1Q9Y3R0 1128 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 PKD1L1Q8TDX9 2849 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 MYH7BA7E2Y1 1941 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 TTC3P53804 2025 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 ARHGEF17Q96PE2 2063 aaPredicted RBP5.43□□□□□ -1.54
VPS53-219ENST00000576019 LOXHD1Q8IVV2 1947 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 A0A1W2PPK0 400 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 PIPSLA2A3N6 862 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 TRIM49BA6NDI0 452 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 NEMP2A6NFY4 417 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 H0YC42 278 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 HS3ST1O14792 307 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 CASQ2O14958 399 aaPredicted RBP5.43□□□□□ -1.54
VPS53-219ENST00000576019 RRP8O43159 456 aaKnown RBP5.43□□□□□ -1.54
VPS53-219ENST00000576019 TLX3O43711 291 aaPredicted RBP5.43□□□□□ -1.54
VPS53-219ENST00000576019 GPRIN2O60269 458 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 CAVIN2O95810 425 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 C9P02748 559 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 SAGP10523 405 aaPredicted RBP5.43□□□□□ -1.54
VPS53-219ENST00000576019 CPA3P15088 417 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 HOXA6P31267 233 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 PTGER3P43115 390 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 MTIF2P46199 727 aaKnown RBP5.43□□□□□ -1.54
VPS53-219ENST00000576019 PPP3CCP48454 512 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 SLC9A3P48764 834 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 CDH12P55289 794 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 COG7P83436 770 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 FOXM1Q08050 763 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 KIF5AQ12840 1032 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 LCP2Q13094 533 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 PDZK1IP1Q13113 114 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 SNTB2Q13425 540 aaKnown RBP5.43□□□□□ -1.54
VPS53-219ENST00000576019 HTR4Q13639 388 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 HNRNPDQ14103 355 aaKnown RBP5.43□□□□□ -1.54
VPS53-219ENST00000576019 STXBP2Q15833 593 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 NADK2Q4G0N4 442 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 KCTD21Q4G0X4 260 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 ABHD17BQ5VST6 288 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 SIGLEC15Q6ZMC9 328 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 ARHGAP22Q7Z5H3 698 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 NRROSQ86YC3 692 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 TMEM151BQ8IW70 566 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 ZCCHC7Q8N3Z6 543 aaKnown RBP5.43□□□□□ -1.54
VPS53-219ENST00000576019 SLC38A9Q8NBW4 561 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 CKAP2Q8WWK9 683 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 EME1Q96AY2 570 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 MOCOSQ96EN8 888 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 SSX3Q99909 188 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 TSPYL1Q9H0U9 437 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 SIRPDQ9H106 197 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 SEMA6AQ9H2E6 1030 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 TMEM245Q9H330 911 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 HHATLQ9HCP6 504 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 SPAG4Q9NPE6 437 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 PDGFCQ9NRA1 345 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 RNF146Q9NTX7 359 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 DDX18Q9NVP1 670 aaKnown RBP5.43□□□□□ -1.54
VPS53-219ENST00000576019 TMED5Q9Y3A6 229 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 CCDC168Q8NDH2 2452 aa5.43□□□□□ -1.54
VPS53-219ENST00000576019 MED13Q9UHV7 2174 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 NBASA2RRP1 2371 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 A0A0G2JPF8 293 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 BCLAF3A2AJT9 711 aaKnown RBP5.42□□□□□ -1.54
VPS53-219ENST00000576019 FAM149AA5PLN7 773 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 C2CD4BA6NLJ0 364 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 RSPH10B2B2RC85 870 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 HNRNPCL3B7ZW38 293 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 SPINT2O43291 252 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 ZNF623O75123 536 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 FLOT1O75955 427 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 KRT8P05787 483 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 IGKV5-2P06315 115 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms