RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CCKARP32238 428 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 GPR143P51810 404 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 PRDX1Q06830 199 aaKnown RBP14.83□□□□□ -0.04
VPS53-218ENST00000575207 WASHC5Q12768 1159 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 TERF2Q15554 542 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 SLC9A4Q6AI14 798 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 RANBP10Q6VN20 620 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 OR10H5Q8NGA6 315 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.83□□□□□ -0.04
VPS53-218ENST00000575207 LIN28AQ9H9Z2 209 aaKnown RBP14.83□□□□□ -0.04
VPS53-218ENST00000575207 ZFP64Q9NPA5 681 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 SPATA7Q9P0W8 599 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 SAMD15Q9P1V8 674 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 KLHL8Q9P2G9 620 aaPredicted RBP14.83□□□□□ -0.04
VPS53-218ENST00000575207 PACSIN3Q9UKS6 424 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 KCNS2Q9ULS6 477 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.82□□□□□ -0.04
VPS53-218ENST00000575207 A8MUA0 341 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 APOL1O14791 398 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 MSTNO14793 375 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 HAT1O14929 419 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 TMPRSS2O15393 492 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 PLAUP00749 431 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 CD79BP40259 229 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 EEF1A1P68104 462 aaKnown RBP14.82□□□□□ -0.04
VPS53-218ENST00000575207 BEX5Q5H9J7 111 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 EEF1A1P5Q5VTE0 462 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 ABHD17CQ6PCB6 329 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 C22orf34Q6ZV56 151 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 PLD3Q8IV08 490 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 PPHLN1Q8NEY8 458 aaKnown RBP14.82□□□□□ -0.04
VPS53-218ENST00000575207 OR5T3Q8NGG3 340 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 DNAJC1Q96KC8 554 aaKnown RBP14.82□□□□□ -0.04
VPS53-218ENST00000575207 CCDC138Q96M89 665 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 CCDC77Q9BR77 488 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 TMEM204Q9BSN7 226 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 MRFAP1Q9Y605 127 aa14.82□□□□□ -0.04
VPS53-218ENST00000575207 SLC35F4A4IF30 521 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 LRRC3CA6NJW4 275 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 KPNA5O15131 536 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 KLF4O43474 513 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 B4GALT2O60909 372 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 ERGP11308 486 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 UGT2B10P36537 528 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 CDKN1AP38936 164 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 BTG2P78543 158 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 HYAL2Q12891 473 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 ICE2Q659A1 982 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 PLXDC2Q6UX71 529 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 TREML4Q6UXN2 200 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 OR6P1Q8NGX9 317 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 ANKRD9Q96BM1 317 aaPredicted RBP14.81□□□□□ -0.04
VPS53-218ENST00000575207 SLC30A3Q99726 388 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 BARX1Q9HBU1 254 aaPredicted RBP14.81□□□□□ -0.04
VPS53-218ENST00000575207 BOKQ9UMX3 212 aaPredicted RBP14.81□□□□□ -0.04
VPS53-218ENST00000575207 CAMK2AQ9UQM7 478 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 NAALAD2Q9Y3Q0 740 aa14.81□□□□□ -0.04
VPS53-218ENST00000575207 KCNE1BA0A087WTH5 132 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 FAM234BA2RU67 622 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 ELOA3DA6NLF2 546 aaPredicted RBP14.8□□□□□ -0.04
VPS53-218ENST00000575207 MYO1FO00160 1098 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 NDUFS7O75251 213 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 MYO1DO94832 1006 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 TPM2P07951 284 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 DANCRP0C864 163 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 KDELR1P24390 212 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 PIGAP37287 484 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 BDKRB1P46663 353 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 SLCO1A2P46721 670 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 ELOA3BQ3SY89 546 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 ADGRD1Q6QNK2 874 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 PID1Q7Z2X4 250 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 ZNF550Q7Z398 422 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 CPNE8Q86YQ8 564 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 ELOA3Q8NG57 546 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 ZPLD1Q8TCW7 415 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 SLC44A1Q8WWI5 657 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 SMPDL3AQ92484 453 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 RAPGEF5Q92565 580 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 CAVIN3Q969G5 261 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 NCLNQ969V3 563 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 GTPBP3Q969Y2 492 aaKnown RBP14.8□□□□□ -0.04
VPS53-218ENST00000575207 ZC3HAV1LQ96H79 300 aaKnown RBP14.8□□□□□ -0.04
VPS53-218ENST00000575207 WDYHV1Q96HA8 205 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 MACROD1Q9BQ69 325 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 APOL2Q9BQE5 337 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 ACBD3Q9H3P7 528 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 ZNHIT6Q9NWK9 470 aaKnown RBP14.8□□□□□ -0.04
VPS53-218ENST00000575207 TTC7AQ9ULT0 858 aaPredicted RBP14.8□□□□□ -0.04
VPS53-218ENST00000575207 LIPT1Q9Y234 373 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 SLC22A7Q9Y694 548 aa14.8□□□□□ -0.04
VPS53-218ENST00000575207 ZNF860A6NHJ4 632 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 F8W8V4 182 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 WWP2O00308 870 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 CCNDBP1O95273 360 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 APOA4P06727 396 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 SOD3P08294 240 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 MAOAP21397 527 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 RPA3P35244 121 aaPredicted RBP14.79□□□□□ -0.04
VPS53-218ENST00000575207 ADRA1AP35348 466 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms