RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TFECO14948 347 aaPredicted RBP19.67■□□□□ 0.74
VPS53-216ENST00000574029 PTGS2P35354 604 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 CLCN2P51788 898 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 TERF2Q15554 542 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 TMPRSS11BQ86T26 416 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 C16orf52Q8NHV5 167 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 CA5BP1Q8WTZ4 195 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 SDCCAG3Q96C92 435 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 OSBPL9Q96SU4 736 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 RHBGQ9H310 441 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 PPANQ9NQ55 473 aaKnown RBP19.67■□□□□ 0.74
VPS53-216ENST00000574029 PPT2Q9UMR5 302 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 PPIEQ9UNP9 301 aaKnown RBP19.67■□□□□ 0.74
VPS53-216ENST00000574029 SLC22A14Q9Y267 594 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 MMACHCQ9Y4U1 282 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 TRBV11-1A0A0K0K1C0 115 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 A0A1B0GTH9 108 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 PEX1O43933 1283 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 TFEBP19484 476 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 RBBP5Q15291 538 aaKnown RBP19.66■□□□□ 0.74
VPS53-216ENST00000574029 BBS9Q3SYG4 887 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 TOR1AIP1Q5JTV8 583 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 TRMT10BQ6PF06 316 aaKnown RBP19.66■□□□□ 0.74
VPS53-216ENST00000574029 SLC35F6Q8N357 371 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 ZFP62Q8NB50 900 aaPredicted RBP19.66■□□□□ 0.74
VPS53-216ENST00000574029 ANKRD7Q92527 254 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 SLCO2A1Q92959 643 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 COQ3Q9NZJ6 369 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 ASIC3Q9UHC3 531 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 ZNF223Q9UK11 482 aaPredicted RBP19.66■□□□□ 0.74
VPS53-216ENST00000574029 PYCARDQ9ULZ3 195 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 HRH3Q9Y5N1 445 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 KCNE2Q9Y6J6 123 aa19.66■□□□□ 0.74
VPS53-216ENST00000574029 MYO1DO94832 1006 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 ZNF37AP17032 561 aaPredicted RBP19.65■□□□□ 0.74
VPS53-216ENST00000574029 IVDP26440 423 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 RFC3P40938 356 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 TESK1Q15569 626 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 CMPK2Q5EBM0 449 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 MEX3BQ6ZN04 569 aaKnown RBP19.65■□□□□ 0.74
VPS53-216ENST00000574029 SCUBE1Q8IWY4 988 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 CYP4Z2PQ8N1L4 340 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 MARVELD2Q8N4S9 558 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 CHTF18Q8WVB6 975 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 MCCC2Q9HCC0 563 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 PLSCR2Q9NRY7 297 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 CLDN16Q9Y5I7 305 aa19.65■□□□□ 0.74
VPS53-216ENST00000574029 USP27XA6NNY8 438 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 CDC7O00311 574 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 HS6ST1O60243 411 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 ITGA10O75578 1167 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 TPOP07202 933 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 ELK3P41970 407 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 GPR143P51810 404 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 STXBP1P61764 594 aaKnown RBP19.64■□□□□ 0.73
VPS53-216ENST00000574029 BTN3A2P78410 334 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 CDKL1Q00532 357 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 TLE4Q04727 773 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 RUNX2Q13950 521 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 STEAP4Q687X5 459 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 MDGA2Q7Z553 956 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 CD163Q86VB7 1156 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 TMEM156Q8N614 296 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 GAL3ST3Q96A11 431 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 CFAP36Q96G28 342 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 VMP1Q96GC9 406 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 WDR83Q9BRX9 315 aaKnown RBP19.64■□□□□ 0.73
VPS53-216ENST00000574029 NPLQ9BXD5 320 aaPredicted RBP19.64■□□□□ 0.73
VPS53-216ENST00000574029 FBXW2Q9UKT8 454 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 F8P00451 2351 aa19.64■□□□□ 0.73
VPS53-216ENST00000574029 CES2O00748 559 aa19.63■□□□□ 0.73
VPS53-216ENST00000574029 HSD17B7P56937 341 aa19.63■□□□□ 0.73
VPS53-216ENST00000574029 HP1BP3Q5SSJ5 553 aaPredicted RBP19.63■□□□□ 0.73
VPS53-216ENST00000574029 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.63■□□□□ 0.732e-7■■■■■ 278.5
VPS53-216ENST00000574029 PDIK1LQ8N165 341 aa19.63■□□□□ 0.73
VPS53-216ENST00000574029 DDX47Q9H0S4 455 aaKnown RBP19.63■□□□□ 0.73
VPS53-216ENST00000574029 PRTFDC1Q9NRG1 225 aa19.63■□□□□ 0.73
VPS53-216ENST00000574029 PNO1Q9NRX1 252 aaKnown RBP19.63■□□□□ 0.73
VPS53-216ENST00000574029 CHMP2BQ9UQN3 213 aa19.63■□□□□ 0.73
VPS53-216ENST00000574029 OARD1Q9Y530 152 aa19.63■□□□□ 0.73
VPS53-216ENST00000574029 TEX264Q9Y6I9 313 aa19.63■□□□□ 0.73
VPS53-216ENST00000574029 ADGRG4Q8IZF6 3080 aa19.63■□□□□ 0.73
VPS53-216ENST00000574029 HCFC1P51610 2035 aa19.63■□□□□ 0.73
VPS53-216ENST00000574029 NPEPPSL1A6NEC2 478 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 TGFBR3LH3BV60 316 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 CDC40O60508 579 aaKnown RBP eCLIP19.62■□□□□ 0.73
VPS53-216ENST00000574029 C1GALT1C1LP0DN25 315 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 IGFBP2P18065 325 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 HNMTP50135 292 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 GPR85P60893 370 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 FRG1Q14331 258 aaKnown RBP19.62■□□□□ 0.73
VPS53-216ENST00000574029 TMEM211Q6ICI0 200 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 SLCO4C1Q6ZQN7 724 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 CDH24Q86UP0 819 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 KLHDC8AQ8IYD2 350 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 NKAPQ8N5F7 415 aaKnown RBP19.62■□□□□ 0.73
VPS53-216ENST00000574029 OR52N2Q8NGI0 321 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 NCLNQ969V3 563 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 MS4A6EQ96DS6 147 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 FAR2Q96K12 515 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms