RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 DMRT3Q9NQL9 472 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 LGALS13Q9UHV8 139 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 ZNF490Q9ULM2 529 aaPredicted RBP12.27□□□□□ -0.45
CLK3-224ENST00000568605 HEMK1Q9Y5R4 338 aaPredicted RBP12.27□□□□□ -0.45
CLK3-224ENST00000568605 NSG1A0A0A6YYJ2 146 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 A0A1W2PQ72 361 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 CHST10O43529 356 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 CEACAM4O75871 244 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 SUPT7LO94864 414 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 UQCRHP07919 91 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 SMIM10L1P0DMW3 83 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 KRT4P19013 534 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 ITGA3P26006 1051 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 SSR2P43308 183 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 ARFIP1P53367 373 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 PLA2G16P53816 162 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 OLR1P78380 273 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 BTN3A2P78410 334 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 EEF1A2Q05639 463 aaKnown RBP12.26□□□□□ -0.45
CLK3-224ENST00000568605 NFATC3Q12968 1075 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 IFT88Q13099 833 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 MYBPC3Q14896 1274 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 CPSF6Q16630 551 aaKnown RBP eCLIP12.26□□□□□ -0.45
CLK3-224ENST00000568605 KHDRBS2Q5VWX1 349 aaKnown RBP12.26□□□□□ -0.45
CLK3-224ENST00000568605 FAAH2Q6GMR7 532 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 ADNP2Q6IQ32 1131 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 KIRREL2Q6UWL6 708 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 QSOX2Q6ZRP7 698 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 VN1R5Q7Z5H4 357 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 LAPTM4BQ86VI4 370 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 ARMC2Q8NEN0 867 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 OR52B6Q8NGF0 335 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 OR5T3Q8NGG3 340 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 HUS1BQ8NHY5 278 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 TM9SF4Q92544 642 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 SMIM10Q96HG1 83 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 TMEM237Q96Q45 408 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 TBCDQ9BTW9 1192 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 RBCK1Q9BYM8 510 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 SEMA4CQ9C0C4 833 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 VN1R1Q9GZP7 353 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 KLHL31Q9H511 634 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 ELOVL6Q9H5J4 265 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 MKS1Q9NXB0 559 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 SENP1Q9P0U3 644 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 PLAAQ9Y263 795 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 TP53TG5Q9Y2B4 290 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 ZNF451Q9Y4E5 1061 aa12.26□□□□□ -0.45
CLK3-224ENST00000568605 LOC102723996A0A087X1L8 192 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 A0A0G2JN53 185 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 CCDC151A5D8V7 595 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 H3BQF6 201 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 OR7A17O14581 309 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 CDC123O75794 336 aaPredicted RBP12.25□□□□□ -0.45
CLK3-224ENST00000568605 MLYCDO95822 493 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 SBK3P0C264 359 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 COX6A1P12074 109 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 IMPDH1P20839 514 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 SOX8P57073 446 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 RAB38P57729 211 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 CLCQ05315 142 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 ASPHQ12797 758 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 TRAF3Q13114 568 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 ABRAXAS2Q15018 415 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 ZRSR2Q15696 482 aaKnown RBP12.25□□□□□ -0.45
CLK3-224ENST00000568605 AP5B1Q2VPB7 878 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 KRT71Q3SY84 523 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 ZNF678Q5SXM1 525 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 VWA5B1Q5TIE3 1220 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 ABHD17CQ6PCB6 329 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 TMEM205Q6UW68 189 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 ZYG11AQ6WRX3 759 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 ASB18Q6ZVZ8 466 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 NDUFAF7Q7L592 441 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 MILR1Q7Z6M3 343 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 TRABD2AQ86V40 505 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 SRRM1Q8IYB3 904 aaKnown RBP12.25□□□□□ -0.45
CLK3-224ENST00000568605 CYP4X1Q8N118 509 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 C4orf33Q8N1A6 199 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 CA13Q8N1Q1 262 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 TMEM151AQ8N4L1 468 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 MYRIPQ8NFW9 859 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 SREK1Q8WXA9 508 aaKnown RBP12.25□□□□□ -0.45
CLK3-224ENST00000568605 RGMAQ96B86 450 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 L3HYPDHQ96EM0 354 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 SMC6Q96SB8 1091 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 MTERF1Q99551 399 aaKnown RBP12.25□□□□□ -0.45
CLK3-224ENST00000568605 TUBB6Q9BUF5 446 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 TMEM109Q9BVC6 243 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 TRPS1Q9UHF7 1281 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 PPT2Q9UMR5 302 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 RNF11Q9Y3C5 154 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 MMACHCQ9Y4U1 282 aa12.25□□□□□ -0.45
CLK3-224ENST00000568605 IGHV1-45A0A0A0MS14 117 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 BLACEA4D250 179 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 A6NL46 340 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 MAGEB17A8MXT2 336 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 C4orf51C9J302 202 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 FOXE1O00358 373 aaPredicted RBP12.24□□□□□ -0.45
CLK3-224ENST00000568605 CLDN4O14493 209 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms