RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 KHDRBS2Q5VWX1 349 aaKnown RBP12.84□□□□□ -0.35
SHMT2-228ENST00000557302 FRG2Q64ET8 278 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 ABHD17CQ6PCB6 329 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 LAPTM4BQ86VI4 370 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 PEX11GQ96HA9 241 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 VPS50Q96JG6 964 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 KCNC2Q96PR1 638 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 FAM111AQ96PZ2 611 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 FRG2BQ96QU4 278 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 OR1F2PQ96R84 312 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 CENPKQ9BS16 269 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 ROGDIQ9GZN7 287 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 OR51B5Q9H339 312 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 OXSMQ9NWU1 459 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 P4HTMQ9NXG6 502 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 MKL2Q9ULH7 1088 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 HS3ST3B1Q9Y662 390 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 PSMD12O00232 456 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-228ENST00000557302 PCDH17O14917 1159 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 ATXN7O15265 892 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-228ENST00000557302 B3GALT2O43825 422 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 DNAJB6O75190 326 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 JRKO75564 520 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 FHP07954 510 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 CYC1P08574 325 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 FAM87AP0C7U9 286 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 MYZAPP0CAP1 466 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 RNH1P13489 461 aaKnown RBP12.83□□□□□ -0.36
SHMT2-228ENST00000557302 CREB1P16220 341 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 PTX3P26022 381 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-228ENST00000557302 NEK2P51955 445 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 RAP1GDS1P52306 607 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 MTTPP55157 894 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 RPS13P62277 151 aaKnown RBP12.83□□□□□ -0.36
SHMT2-228ENST00000557302 CFAP157Q5JU67 520 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 DEPDC1Q5TB30 811 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 CPZQ66K79 652 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 LETMD1Q6P1Q0 360 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 GPRIN3Q6ZVF9 776 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 MED25Q71SY5 747 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 C10orf107Q8IVU9 208 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 APLFQ8IW19 511 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-228ENST00000557302 SHISA5Q8N114 240 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 RNF175Q8N4F7 328 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 TMEM102Q8N9M5 508 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-228ENST00000557302 WDR20Q8TBZ3 569 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 TCP10LQ8TDR4 215 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 TBC1D20Q96BZ9 403 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 ZBTB9Q96C00 473 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 PGM2Q96G03 612 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 FER1L6-AS2Q96M78 137 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 QRFPRQ96P65 431 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 SERINC2Q96SA4 455 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 TBCDQ9BTW9 1192 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 NPLQ9BXD5 320 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-228ENST00000557302 RBCK1Q9BYM8 510 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 VN1R1Q9GZP7 353 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 ING2Q9H160 280 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 ELOVL6Q9H5J4 265 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 SLC17A7Q9P2U7 560 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 TRPS1Q9UHF7 1281 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 SNX6Q9UNH7 406 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 BAHCC1Q9P281 2608 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 SCN3AQ9NY46 2000 aa12.83□□□□□ -0.36
SHMT2-228ENST00000557302 A0A1B0GTL3 188 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 MAGEB17A8MXT2 336 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 AGPSO00116 658 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 FOXE1O00358 373 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-228ENST00000557302 SAP18O00422 153 aaKnown RBP12.82□□□□□ -0.36
SHMT2-228ENST00000557302 SOCS6O14544 535 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 TYROBPO43914 113 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 ALOX12BO75342 701 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 OR4F21O95013 312 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 ACPPP15309 386 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 JAK1P23458 1154 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 CERS1P27544 350 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 NAGLUP54802 743 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 PKNOX1P55347 436 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 ASPHQ12797 758 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 CHAF1BQ13112 559 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 PCLAFQ15004 111 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 AP5B1Q2VPB7 878 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 TUBB8Q3ZCM7 444 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 DCAF10Q5QP82 559 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 LIPMQ5VYY2 423 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 PCSK4Q6UW60 755 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 KIRREL2Q6UWL6 708 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 FRMD7Q6ZUT3 714 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 UBE3DQ7Z6J8 389 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 CA13Q8N1Q1 262 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 CDYL2Q8N8U2 506 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 LSM14AQ8ND56 463 aaKnown RBP12.82□□□□□ -0.36
SHMT2-228ENST00000557302 MYRIPQ8NFW9 859 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 METTL21AQ8WXB1 218 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 RGMAQ96B86 450 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 MTFMTQ96DP5 389 aaKnown RBP12.82□□□□□ -0.36
SHMT2-228ENST00000557302 SERPINI1Q99574 410 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 SLC29A3Q9BZD2 475 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 STMN4Q9H169 189 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-228ENST00000557302 ADNPQ9H2P0 1102 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms