RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 SERPINB4P48594 390 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 FOXA1P55317 472 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 PKNOX1P55347 436 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 SKP1P63208 163 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 MC1RQ01726 317 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 KLC1Q07866 573 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 IFT88Q13099 833 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 KHDRBS2Q5VWX1 349 aaKnown RBP16.54■□□□□ 0.24
SHMT2-225ENST00000556798 ABHD17CQ6PCB6 329 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 UBE3DQ7Z6J8 389 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 LAPTM4BQ86VI4 370 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 ANKRD42Q8N9B4 389 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 PEX11GQ96HA9 241 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 MAGEB10Q96LZ2 347 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-225ENST00000556798 HBEGFQ99075 208 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 FAM117AQ9C073 453 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 TNFRSF12AQ9NP84 129 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 NXT1Q9UKK6 140 aaKnown RBP16.54■□□□□ 0.24
SHMT2-225ENST00000556798 STK38LQ9Y2H1 464 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 TIMM22Q9Y584 194 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 MED13Q9UHV7 2174 aa16.54■□□□□ 0.24
SHMT2-225ENST00000556798 TMEM120BA0PK00 339 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 CHST10O43529 356 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 ZWINTO95229 277 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 ESRRBO95718 433 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 PDYNP01213 254 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 CD63P08962 238 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 HMOX2P30519 316 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 HPDP32754 393 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-225ENST00000556798 HTR6P50406 440 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 NAA20P61599 178 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 TGM3Q08188 693 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 ASPHQ12797 758 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 UGT8Q16880 541 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 TMEM35AQ53FP2 167 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 DEPDC1Q5TB30 811 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 AGBL2Q5U5Z8 902 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 ZNF793Q6ZN11 406 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 CHSY3Q70JA7 882 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 GPR155Q7Z3F1 870 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 METTL6Q8TCB7 284 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 ADAMTS17Q8TE56 1095 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 SNRNP27Q8WVK2 155 aaKnown RBP16.53■□□□□ 0.24
SHMT2-225ENST00000556798 SELENOMQ8WWX9 145 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 QRFPRQ96P65 431 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 CRB3Q9BUF7 120 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 SLC29A3Q9BZD2 475 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 VIPAS39Q9H9C1 493 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 COPS7BQ9H9Q2 264 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-225ENST00000556798 PRDM7Q9NQW5 492 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 SNX6Q9UNH7 406 aa16.53■□□□□ 0.24
SHMT2-225ENST00000556798 NBEAQ8NFP9 2946 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 OR2W5A6NFC9 320 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 FOXE1O00358 373 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-225ENST00000556798 MANBAO00462 879 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 B3GALT2O43825 422 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 CDC123O75794 336 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-225ENST00000556798 BMP10O95393 424 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 ENO1P06733 434 aaKnown RBP16.52■□□□□ 0.24
SHMT2-225ENST00000556798 CHRNGP07510 517 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 RAP1GDS1P52306 607 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 EFNA3P52797 238 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 MTTPP55157 894 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 RUNX2Q13950 521 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 DEFB109BQ30KR1 87 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 TTMPQ5BVD1 217 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 MFSD4BQ5TF39 518 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 NIPAL1Q6NVV3 410 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 NUDCD3Q8IVD9 361 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 CA13Q8N1Q1 262 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 MGARPQ8TDB4 240 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 KCNC2Q96PR1 638 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 PAIP2Q9BPZ3 127 aaKnown RBP16.52■□□□□ 0.24
SHMT2-225ENST00000556798 MESP1Q9BRJ9 268 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 TGIF2Q9GZN2 237 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 C14orf105Q9NVL8 296 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 C3orf18Q9UK00 162 aa16.52■□□□□ 0.24
SHMT2-225ENST00000556798 A0A088AWK7 358 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 IDSB3KWA1 339 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 PLPP1O14494 284 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 CRCPO75575 148 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 KRT6AP02538 564 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 KRT6BP04259 564 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 DHRS4L1P0CG22 281 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 ZNF10P21506 573 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-225ENST00000556798 PTX3P26022 381 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-225ENST00000556798 SSR2P43308 183 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 KRT6CP48668 564 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 SSPNQ14714 243 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 MINDY4Q4G0A6 757 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 CRTC2Q53ET0 693 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-225ENST00000556798 FAAH2Q6GMR7 532 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 SCIMPQ6UWF3 145 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 PPP1R32Q7Z5V6 425 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 MRGPREQ86SM8 312 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 CUZD1Q86UP6 607 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 RAB43Q86YS6 212 aa16.51■□□□□ 0.23
SHMT2-225ENST00000556798 SRFBP1Q8NEF9 429 aaKnown RBP16.51■□□□□ 0.23
SHMT2-225ENST00000556798 SREK1Q8WXA9 508 aaKnown RBP16.51■□□□□ 0.23
SHMT2-225ENST00000556798 RGMAQ96B86 450 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms