RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 LY6DQ14210 128 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 DUSP28Q4G0W2 176 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 FAM133BQ5BKY9 247 aaKnown RBP4.12□□□□□ -1.75
PRPF39-209ENST00000556353 IGSF11Q5DX21 431 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 SLC35D3Q5M8T2 416 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 LCE3EQ5T5B0 92 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 GPR142Q7Z601 462 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 TBC1D1Q86TI0 1168 aaPredicted RBP4.12□□□□□ -1.75
PRPF39-209ENST00000556353 KBTBD6Q86V97 674 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 POC5Q8NA72 575 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 MIPOL1Q8TD10 442 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 SDR42E1Q8WUS8 393 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 SSMEM1Q8WWF3 244 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 FAM120BQ96EK7 910 aaKnown RBP4.12□□□□□ -1.75
PRPF39-209ENST00000556353 NKX3-1Q99801 234 aaPredicted RBP4.12□□□□□ -1.75
PRPF39-209ENST00000556353 CCDC94Q9BW85 323 aaPredicted RBP4.12□□□□□ -1.75
PRPF39-209ENST00000556353 IL1RAPL2Q9NP60 686 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 TMCC3Q9ULS5 477 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 WBP11Q9Y2W2 641 aaKnown RBP4.12□□□□□ -1.75
PRPF39-209ENST00000556353 CSNK1G3Q9Y6M4 447 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 LOXHD1Q8IVV2 1947 aa4.12□□□□□ -1.75
PRPF39-209ENST00000556353 COL4A4P53420 1690 aaPredicted RBP4.12□□□□□ -1.75
PRPF39-209ENST00000556353 SPTBN4Q9H254 2564 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 A0A1W2PPR1 153 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 A0A1W2PRQ8 180 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 TMEM221A6NGB7 291 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 AGAP14A8MT82 685 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 BCL10O95999 233 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 IGHEP01854 428 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 DARSP14868 501 aaKnown RBP4.11□□□□□ -1.75
PRPF39-209ENST00000556353 AKR1B1P15121 316 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 HOXD10P28358 340 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 HLA-FP30511 346 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 GCH1P30793 250 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 NRIP1P48552 1158 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 SIM2Q14190 667 aaPredicted RBP4.11□□□□□ -1.75
PRPF39-209ENST00000556353 GRB14Q14449 540 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 LRRC26Q2I0M4 334 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 SLC25A30Q5SVS4 291 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 RNASEH2BQ5TBB1 312 aaKnown RBP4.11□□□□□ -1.75
PRPF39-209ENST00000556353 C11orf63Q6NUN7 778 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 Q7L0L9 218 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 FBXL16Q8N461 479 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 PTPMT1Q8WUK0 201 aaPredicted RBP4.11□□□□□ -1.75
PRPF39-209ENST00000556353 DYNLL2Q96FJ2 89 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 GAL3ST4Q96RP7 486 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 PANK2Q9BZ23 570 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 WNT5BQ9H1J7 359 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 TRPV4Q9HBA0 871 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 UTP6Q9NYH9 597 aaKnown RBP4.11□□□□□ -1.75
PRPF39-209ENST00000556353 CLIC5Q9NZA1 410 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 C19orf25Q9UFG5 118 aaPredicted RBP4.11□□□□□ -1.75
PRPF39-209ENST00000556353 FBXO2Q9UK22 296 aaPredicted RBP4.11□□□□□ -1.75
PRPF39-209ENST00000556353 RARRES3Q9UL19 164 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 PTRH2Q9Y3E5 179 aaKnown RBP4.11□□□□□ -1.75
PRPF39-209ENST00000556353 ZNF532Q9HCE3 1301 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 SIP14410 1827 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 ROBO3Q96MS0 1386 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 MICAL3Q7RTP6 2002 aa4.11□□□□□ -1.75
PRPF39-209ENST00000556353 NLRC5Q86WI3 1866 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 TRIM64CA6NLI5 447 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 BAG3O95817 575 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 CYBAP13498 195 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 CREB5Q02930 508 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 EFTUD2Q15029 972 aaKnown RBP eCLIP4.1□□□□□ -1.753e-10■■■■□ 25.3
PRPF39-209ENST00000556353 CA9Q16790 459 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 C15orf59Q2T9L4 293 aaPredicted RBP4.1□□□□□ -1.75
PRPF39-209ENST00000556353 SYT14P1Q58G82 188 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 CCDC158Q5M9N0 1113 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 TMEM211Q6ICI0 200 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 SZRD1Q7Z422 152 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 SLC39A11Q8N1S5 342 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 C17orf53Q8N3J3 647 aaPredicted RBP4.1□□□□□ -1.75
PRPF39-209ENST00000556353 GUF1Q8N442 669 aaKnown RBP4.1□□□□□ -1.75
PRPF39-209ENST00000556353 ARL6IP6Q8N6S5 226 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 APOBEC4Q8WW27 367 aaKnown RBP4.1□□□□□ -1.75
PRPF39-209ENST00000556353 LPGAT1Q92604 370 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 SFXN2Q96NB2 322 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 AGAP4Q96P64 663 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 C11orf49Q9H6J7 331 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 OPA3Q9H6K4 179 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 RPAP3Q9H6T3 665 aaPredicted RBP4.1□□□□□ -1.75
PRPF39-209ENST00000556353 EQTNQ9NQ60 294 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 NDE1Q9NXR1 346 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 DMXL1Q9Y485 3027 aa4.1□□□□□ -1.75
PRPF39-209ENST00000556353 DNAH14Q0VDD8 3507 aa4.09□□□□□ -1.75
PRPF39-209ENST00000556353 CACNA1HO95180 2353 aa4.09□□□□□ -1.75
PRPF39-209ENST00000556353 FEZF1A0PJY2 475 aa4.09□□□□□ -1.75
PRPF39-209ENST00000556353 ASB14A6NK59 587 aa4.09□□□□□ -1.75
PRPF39-209ENST00000556353 C19orf81C9J6K1 198 aa4.09□□□□□ -1.75
PRPF39-209ENST00000556353 ADAMDEC1O15204 470 aa4.09□□□□□ -1.75
PRPF39-209ENST00000556353 DOK2O60496 412 aa4.09□□□□□ -1.75
PRPF39-209ENST00000556353 TRUB2O95900 331 aaKnown RBP4.09□□□□□ -1.75
PRPF39-209ENST00000556353 SMIM18P0DKX4 95 aa4.09□□□□□ -1.75
PRPF39-209ENST00000556353 ZNF131P52739 623 aa4.09□□□□□ -1.75
PRPF39-209ENST00000556353 NAP1L1P55209 391 aaKnown RBP4.09□□□□□ -1.75
PRPF39-209ENST00000556353 CSNK2BP67870 215 aa4.09□□□□□ -1.75
PRPF39-209ENST00000556353 MAT1AQ00266 395 aaKnown RBP4.09□□□□□ -1.75
PRPF39-209ENST00000556353 ZNF74Q16587 644 aa4.09□□□□□ -1.75
PRPF39-209ENST00000556353 UGT3A1Q6NUS8 523 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms