RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 GPRC5BQ9NZH0 403 aa15.32■□□□□ 0.04
VPS29-207ENST00000549970 RNF112Q9ULX5 631 aa15.32■□□□□ 0.04
VPS29-207ENST00000549970 GABRR3A8MPY1 467 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 CLGNO14967 610 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 STK16O75716 305 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 STSP08842 583 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 MST1P26927 711 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 GGT5P36269 586 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 CD96P40200 585 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 PER3P56645 1201 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 OC90Q02509 493 aaPredicted RBP15.31■□□□□ 0.04
VPS29-207ENST00000549970 EFTUD2Q15029 972 aaKnown RBP eCLIP15.31■□□□□ 0.043e-9■■■□□ 18.5
VPS29-207ENST00000549970 SPINK14Q6IE38 97 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 RAPH1Q70E73 1250 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 CMC1Q7Z7K0 106 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 PDPRQ8NCN5 879 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 ARMC2Q8NEN0 867 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 DNAJB8Q8NHS0 232 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 ELP5Q8TE02 316 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 MS4A6EQ96DS6 147 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 UBXN10Q96LJ8 280 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 CDCP1Q9H5V8 836 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 COPG2Q9UBF2 871 aa15.31■□□□□ 0.04
VPS29-207ENST00000549970 IGKV3D-11A0A0A0MRZ8 115 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 TCRBV16S1A1N1A0A5B0 115 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 LRIT2A6NDA9 550 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 ANKDD1BA6NHY2 528 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 SAGE2PA6NJ88 616 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 CCNT2O60583 730 aaKnown RBP15.3■□□□□ 0.04
VPS29-207ENST00000549970 PRAMEF4O60810 478 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 CLEC3AO75596 197 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 UNC5CO95185 931 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 S100BP04271 92 aaPredicted RBP15.3■□□□□ 0.04
VPS29-207ENST00000549970 GSTM2P28161 218 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 STX2P32856 288 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 PLA2G16P53816 162 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 SLC7A5Q01650 507 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 RUNX2Q13950 521 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 DOC2AQ14183 400 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 PDK4Q16654 411 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 XKR6Q5GH73 641 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 CDKL4Q5MAI5 379 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 PRAMEF9Q5VWM5 478 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 ZNF787Q6DD87 383 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 ADNP2Q6IQ32 1131 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 VN1R5Q7Z5H4 357 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 RPS19BP1Q86WX3 136 aaKnown RBP15.3■□□□□ 0.04
VPS29-207ENST00000549970 MDS2Q8NDY4 140 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 KIAA1191Q96A73 305 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 REXO4Q9GZR2 422 aaKnown RBP15.3■□□□□ 0.04
VPS29-207ENST00000549970 EHD1Q9H4M9 534 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 ALG9Q9H6U8 611 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 NT5DC2Q9H857 520 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 PRM3Q9NNZ6 103 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 SEC14L3Q9UDX4 400 aa15.3■□□□□ 0.04
VPS29-207ENST00000549970 PTBP2Q9UKA9 531 aaKnown RBP15.3■□□□□ 0.04
VPS29-207ENST00000549970 MYO7BQ6PIF6 2116 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 UNC79Q9P2D8 2635 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 A0A1B0GUH1 482 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 ESYT3A0FGR9 886 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 ZG16O60844 167 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 TBX6O95947 436 aaPredicted RBP15.29■□□□□ 0.04
VPS29-207ENST00000549970 SLC35E2BP0CK96 405 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 CD46P15529 392 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 TFEBP19484 476 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 EEF1DP29692 281 aaKnown RBP15.29■□□□□ 0.04
VPS29-207ENST00000549970 KCNC1P48547 511 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 DLG1Q12959 904 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 TRIM40Q6P9F5 258 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 ZNF572Q7Z3I7 529 aaPredicted RBP15.29■□□□□ 0.04
VPS29-207ENST00000549970 LGI4Q8N135 537 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 OR2L5Q8NG80 312 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 PTCD3Q96EY7 689 aaKnown RBP15.29■□□□□ 0.04
VPS29-207ENST00000549970 SEC16BQ96JE7 1060 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 PITHD1Q9GZP4 211 aaPredicted RBP15.29■□□□□ 0.04
VPS29-207ENST00000549970 PRTFDC1Q9NRG1 225 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 LRFN1Q9P244 771 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 ZNF490Q9ULM2 529 aaPredicted RBP15.29■□□□□ 0.04
VPS29-207ENST00000549970 MMACHCQ9Y4U1 282 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 ASB1Q9Y576 335 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 PCDHGB6Q9Y5F9 930 aa15.29■□□□□ 0.04
VPS29-207ENST00000549970 CRYBG3Q68DQ2 2970 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 A0A088AWK7 358 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 TRGV8A0A0C4DH27 118 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 SUPT3HB4E1H0 165 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 B3GALT2O43825 422 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 SUPT3HO75486 399 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 MYO1DO94832 1006 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 CD22P20273 847 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 ZNF10P21506 573 aaPredicted RBP15.28■□□□□ 0.04
VPS29-207ENST00000549970 CERS1P27544 350 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 TPP2P29144 1249 aaPredicted RBP15.28■□□□□ 0.04
VPS29-207ENST00000549970 DCTP40126 519 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 RAB38P57729 211 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 IRF8Q02556 426 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 CHIT1Q13231 466 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 ZRSR2Q15696 482 aaKnown RBP15.28■□□□□ 0.04
VPS29-207ENST00000549970 ZNF468Q5VIY5 522 aaPredicted RBP15.28■□□□□ 0.04
VPS29-207ENST00000549970 C8orf74Q6P047 294 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 GALNTL5Q7Z4T8 443 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms