RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SLC15A5A6NIM6 579 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 TLR4O00206 839 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 SLC1A7O00341 560 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 CLN5O75503 358 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 STBD1O95210 358 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 SERPINB2P05120 415 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 ABHD2P08910 425 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 ODC1P11926 461 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 SKILP12757 684 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 NEDD4P46934 1319 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 TAF6P49848 677 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 SLC12A3P55017 1021 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 CASP9P55211 416 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 GUCY2DQ02846 1103 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 CNTN1Q12860 1018 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 SRSF9Q13242 221 aaKnown RBP eCLIP3.57□□□□□ -1.84
VPS29-205ENST00000548539 PDE7AQ13946 482 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 GK2Q14410 553 aaPredicted RBP3.57□□□□□ -1.84
VPS29-205ENST00000548539 MTF1Q14872 753 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 PKN2Q16513 984 aaKnown RBP3.57□□□□□ -1.84
VPS29-205ENST00000548539 CCDC92Q53HC0 331 aaPredicted RBP3.57□□□□□ -1.84
VPS29-205ENST00000548539 LYPLAL1Q5VWZ2 237 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 ARHGAP11AQ6P4F7 1023 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 TMEM64Q6YI46 380 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 STHQ8IWL8 128 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 SLC43A2Q8N370 569 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 RNF149Q8NC42 400 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 OR13C5Q8NGS8 318 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 OR4A16Q8NH70 328 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 FAM76AQ8TAV0 307 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 URGCPQ8TCY9 931 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 CD99L2Q8TCZ2 262 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 MAPK15Q8TD08 544 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 ZNRF4Q8WWF5 429 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 HAS2Q92819 552 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 SLC35C1Q96A29 364 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 OMA1Q96E52 524 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 DTD2Q96FN9 168 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 GMPPAQ96IJ6 420 aaPredicted RBP3.57□□□□□ -1.84
VPS29-205ENST00000548539 PCDHB18PQ96TA0 734 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 CLEC7AQ9BXN2 247 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 DGCR6LQ9BY27 220 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 LRRC2Q9BYS8 371 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 WDR13Q9H1Z4 485 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 ABCG8Q9H221 673 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 ZNF696Q9H7X3 374 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 GPN1Q9HCN4 374 aaPredicted RBP3.57□□□□□ -1.84
VPS29-205ENST00000548539 SCRT2Q9NQ03 307 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 PLCXD1Q9NUJ7 323 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 ATAD3AQ9NVI7 634 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 NDUFA13Q9P0J0 144 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 PILRAQ9UKJ1 303 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 FOXA2Q9Y261 457 aaPredicted RBP3.57□□□□□ -1.84
VPS29-205ENST00000548539 SH3GLB1Q9Y371 365 aa3.57□□□□□ -1.84
VPS29-205ENST00000548539 SPATA31D1Q6ZQQ2 1576 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 PRR23AA6NEV1 266 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 SYT7O43581 403 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 HTATSF1O43719 755 aaKnown RBP3.56□□□□□ -1.84
VPS29-205ENST00000548539 ECE2O60344 883 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 ATP6V1G1O75348 118 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 REC8O95072 547 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 CFC1BP0CG36 223 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 CFC1P0CG37 223 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 KRT3P12035 628 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 FERP16591 822 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 CEBPBP17676 345 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 ANOS1P23352 680 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 MMP12P39900 470 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 SLC6A12P48065 614 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 TNFSF10P50591 281 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 CLCN4P51793 760 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 HUNKP57058 714 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 GPR50Q13585 617 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 GIT2Q14161 759 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 GRB14Q14449 540 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 KRT31Q15323 416 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 TAB1Q15750 504 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 SGSM1Q2NKQ1 1148 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 FAM106AQ4KMX7 169 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 ADAMTSL4-AS1Q5T5F5 129 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 ZNF776Q68DI1 518 aaPredicted RBP3.56□□□□□ -1.84
VPS29-205ENST00000548539 TCEAL6Q6IPX3 200 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 TATDN1Q6P1N9 297 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 Q71RC1 249 aaPredicted RBP3.56□□□□□ -1.84
VPS29-205ENST00000548539 CHMP1BQ7LBR1 199 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 LSMEM2Q8N112 164 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 CCDC185Q8N715 623 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 TMEM99Q8N816 258 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 TRPV3Q8NET8 790 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 RPLP0P6Q8NHW5 317 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 MRGPRDQ8TDS7 321 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 GPR148Q8TDV2 347 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 CASP10Q92851 521 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 ZNF274Q96GC6 653 aaPredicted RBP3.56□□□□□ -1.84
VPS29-205ENST00000548539 ABCG4Q9H172 646 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 TNMDQ9H2S6 317 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 ZNF665Q9H7R5 613 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 PRMT8Q9NR22 394 aaPredicted RBP3.56□□□□□ -1.84
VPS29-205ENST00000548539 SPHK2Q9NRA0 654 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 ANO10Q9NW15 660 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms