RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 KRT31Q15323 416 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 SIX1Q15475 284 aaPredicted RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 SLC14A2Q15849 920 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 CLEC12BQ2HXU8 276 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 ZNF750Q32MQ0 723 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 GPR33Q49SQ1 333 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 CCSMST1Q4G0I0 132 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 ODF2Q5BJF6 829 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 DNAJC21Q5F1R6 531 aaKnown RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 EXOSC6Q5RKV6 272 aaKnown RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 GARNL3Q5VVW2 1013 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 FOXB2Q5VYV0 432 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 SUSD1Q6UWL2 747 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 C12orf54Q6X4T0 127 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 C20orf204Q6ZNR8 217 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 KIAA0408Q6ZU52 694 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 FAM47EQ6ZV65 393 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 SEM1Q6ZVN7 128 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 PLEKHM3Q6ZWE6 761 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 TRILQ7L0X0 811 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 MAATS1Q7Z4T9 603 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 IRF2BP2Q7Z5L9 587 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 THNSL2Q86YJ6 484 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 CCDC50Q8IVM0 306 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 DCUN1D3Q8IWE4 304 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 MRPL41Q8IXM3 137 aaKnown RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 RAB42Q8N4Z0 105 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 TMEM251Q8N6I4 163 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 MLKLQ8NB16 471 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 RNF214Q8ND24 703 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 PSD4Q8NDX1 1056 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 OR2A1Q8NGT9 310 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 PPP1R14CQ8TAE6 165 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 GSDMBQ8TAX9 411 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 ZCCHC10Q8TBK6 192 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 FAM71BQ8TC56 605 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 TMEM171Q8WVE6 324 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 TRIM11Q96F44 468 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 DNAJC1Q96KC8 554 aaKnown RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 FANCD2OSQ96PS1 177 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 PIGQQ9BRB3 760 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 ZNF670Q9BS34 389 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 RBM24Q9BX46 236 aaKnown RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 REG4Q9BYZ8 158 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 HAUS4Q9H6D7 363 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 SYNPO2LQ9H987 977 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 HPF1Q9NWY4 346 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 SAE1Q9UBE0 346 aaPredicted RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 NDRG3Q9UGV2 375 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 PCYOX1Q9UHG3 505 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 RSPH14Q9UHP6 348 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 TTC7AQ9ULT0 858 aaPredicted RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 RUVBL2Q9Y230 463 aaKnown RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 NPFFR2Q9Y5X5 522 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 ANK3Q12955 4377 aaKnown RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 NCKAP5O14513 1909 aa4.42□□□□□ -1.7
LIMS1-214ENST00000542845 SONP18583 2426 aaKnown RBP4.42□□□□□ -1.7
LIMS1-214ENST00000542845 DYSFO75923 2080 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 IGLV3-16A0A075B6K0 115 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 TRBV11-1A0A0K0K1C0 115 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 FEZF1A0PJY2 475 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 LRRD1A4D1F6 860 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 OR2A25A4D2G3 310 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 OR51F1A6NGY5 319 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ZNF860A6NHJ4 632 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 AGAP14A8MT82 685 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 IQCF5A8MTL0 148 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ALG1L2C9J202 215 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 H0YIG0 161 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 AQP7O14520 342 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 TXNDC9O14530 226 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 OR1I1O60431 355 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 B4GALT2O60909 372 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 UBOX5O94941 541 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 AP2A2O94973 939 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 GOSR1O95249 250 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 GSTM1P09488 218 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 MYBL1P10243 752 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 CNR1P21554 472 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 CCR7P32248 378 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 RPA3P35244 121 aaPredicted RBP4.41□□□□□ -1.7
LIMS1-214ENST00000542845 DNASE1L1P49184 302 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ZNF136P52737 540 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 TAS2R40P59535 323 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 OCRLQ01968 901 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 PLOD1Q02809 727 aaPredicted RBP4.41□□□□□ -1.7
LIMS1-214ENST00000542845 MPP3Q13368 585 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 TRIM14Q14142 442 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 FAM53BQ14153 422 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 SPARCL1Q14515 664 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 NFKBIBQ15653 356 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 FBXL19-AS1Q494R0 122 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 NDUFAF5Q5TEU4 345 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 POMZP3Q6PJE2 187 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 RGS9BPQ6ZS82 235 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ABHD13Q7L211 337 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ZNF571Q7Z3V5 609 aaPredicted RBP4.41□□□□□ -1.7
LIMS1-214ENST00000542845 SCUBE1Q8IWY4 988 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms