RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 LINC00032P0C843 101 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 C1QTNF9P0C862 333 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 LIPCP11150 499 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 ITGAXP20702 1163 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 MTTPP55157 894 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 HMGCS1Q01581 520 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 DSG2Q14126 1118 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 UNQ6494/PRO21346Q6UXR6 183 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 METTL4Q8N3J2 472 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 QRFPRQ96P65 431 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 MRPL1Q9BYD6 325 aaKnown RBP16.23■□□□□ 0.19
LIG1-204ENST00000542460 CCDC86Q9H6F5 360 aaKnown RBP16.23■□□□□ 0.19
LIG1-204ENST00000542460 SLCO1B3Q9NPD5 702 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 SPTBP11277 2137 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 CACNA1BQ00975 2339 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 TCP11X1B4DZS4 312 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 RTCAO00442 366 aaKnown RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 B3GALT2O43825 422 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 SKAP2O75563 359 aaPredicted RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 RSL1D1O76021 490 aaKnown RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 SCELO95171 688 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 FBLP22087 321 aaKnown RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 HIST1H1TP22492 207 aaPredicted RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 BSGP35613 385 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 SSR2P43308 183 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 HK2P52789 917 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 PCBP4P57723 403 aaKnown RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 TBL3Q12788 808 aaKnown RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 SPDYAQ5MJ70 313 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 ARHGAP40Q5TG30 622 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 FAM199XQ6PEV8 388 aaPredicted RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 Q6ZSR9 355 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 PAGE2Q7Z2X7 111 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 NUDT13Q86X67 352 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 CACNA2D3Q8IZS8 1091 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 ACOT4Q8N9L9 421 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 NKD1Q969G9 470 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 SERINC2Q96SA4 455 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 NPLQ9BXD5 320 aaPredicted RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 CHST8Q9H2A9 424 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 CCDC134Q9H6E4 229 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 SLC22A11Q9NSA0 550 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 IFT80Q9P2H3 777 aaPredicted RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 VTI1BQ9UEU0 232 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 MARCOQ9UEW3 520 aaPredicted RBP16.22■□□□□ 0.19
LIG1-204ENST00000542460 MAP4K5Q9Y4K4 846 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 CCL27Q9Y4X3 112 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 PTGDR2Q9Y5Y4 395 aa16.22■□□□□ 0.19
LIG1-204ENST00000542460 AKAP13Q12802 2813 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 NPIPB8E9PQR5 432 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 HDAC3O15379 428 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 RDH16O75452 317 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 KITP10721 976 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 PRPH2P23942 346 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 ATP5A1P25705 553 aaKnown RBP16.21■□□□□ 0.19
LIG1-204ENST00000542460 STAT5AP42229 794 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 BTKQ06187 659 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 SLC9A5Q14940 896 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 PDCD2Q16342 344 aaPredicted RBP16.21■□□□□ 0.19
LIG1-204ENST00000542460 SPIN4Q56A73 249 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 XKR7Q5GH72 579 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 LCN10Q6JVE6 187 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 FAM47EQ6ZV65 393 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 MTERF4Q7Z6M4 381 aaKnown RBP16.21■□□□□ 0.19
LIG1-204ENST00000542460 ZCCHC7Q8N3Z6 543 aaKnown RBP16.21■□□□□ 0.19
LIG1-204ENST00000542460 AMER3Q8N944 861 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 CHTF18Q8WVB6 975 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 C19orf60Q96EN9 201 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 METTL2AQ96IZ6 378 aaKnown RBP16.21■□□□□ 0.19
LIG1-204ENST00000542460 TMEM121BQ9BXQ6 578 aaPredicted RBP16.21■□□□□ 0.19
LIG1-204ENST00000542460 ZNF717Q9BY31 904 aaPredicted RBP16.21■□□□□ 0.19
LIG1-204ENST00000542460 DDX31Q9H8H2 851 aaKnown RBP16.21■□□□□ 0.19
LIG1-204ENST00000542460 ADAM29Q9UKF5 820 aa16.21■□□□□ 0.19
LIG1-204ENST00000542460 ZNF860A6NHJ4 632 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 C9J4A7 227 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 ALBP02768 609 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 CD63P08962 238 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 CERS1P27544 350 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 ACSM2AQ08AH3 577 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 ACSM2BQ68CK6 577 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 ZNF793Q6ZN11 406 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 OVCH1Q7RTY7 1134 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 COMMD6Q7Z4G1 85 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 C1orf52Q8N6N3 182 aaKnown RBP16.2■□□□□ 0.18
LIG1-204ENST00000542460 IL22RA1Q8N6P7 574 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 OR5T3Q8NGG3 340 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 OR2T11Q8NH01 316 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 FKBP10Q96AY3 582 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 APIPQ96GX9 242 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 YIPF2Q9BWQ6 316 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 SORBS1Q9BX66 1292 aaKnown RBP16.2■□□□□ 0.18
LIG1-204ENST00000542460 NUF2Q9BZD4 464 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 FAM117AQ9C073 453 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 RIC8BQ9NVN3 520 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 TRPC4Q9UBN4 977 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 GPN3Q9UHW5 284 aaPredicted RBP16.2■□□□□ 0.18
LIG1-204ENST00000542460 USP24Q9UPU5 2620 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 ZFHX4Q86UP3 3567 aa16.2■□□□□ 0.18
LIG1-204ENST00000542460 TRPC5OSA6NMA1 111 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms