RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 SMPDL3AQ92484 453 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 ESAMQ96AP7 390 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 NACC2Q96BF6 587 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 TMEM237Q96Q45 408 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 LMF1Q96S06 567 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 ERVK-6Q9BXR3 956 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 SLC22A11Q9NSA0 550 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 PTBP2Q9UKA9 531 aaKnown RBP11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 AKAP6Q13023 2319 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 ISM1B1AKI9 464 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 K7EPI3 171 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 SOCS6O14544 535 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 KLK8O60259 260 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 CRCPO75575 148 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 UNC5CO95185 931 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 SIX3O95343 332 aaPredicted RBP11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 SERPINE1P05121 402 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 CTSBP07858 339 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 CD63P08962 238 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 EPB42P16452 691 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 MDH1P40925 334 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 GABRA4P48169 554 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 AGTR2P50052 363 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 NAGLUP54802 743 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 TBPL1P62380 186 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 DCDP81605 110 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 STX3Q13277 289 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 PCBP2Q15366 365 aaKnown RBP eCLIP11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 C18orf21Q32NC0 220 aaPredicted RBP11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 ZNF678Q5SXM1 525 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 SUSD1Q6UWL2 747 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 KIRREL2Q6UWL6 708 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 ZCCHC23Q6ZST2 131 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 OR1N1Q8NGS0 311 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 OR2L8Q8NGY9 312 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 UBTD2Q8WUN7 234 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 SLC22A18Q96BI1 424 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 PYCR2Q96C36 320 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 MAGEB18Q96M61 343 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 NRTNQ99748 197 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 TMEM79Q9BSE2 394 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 CD244Q9BZW8 370 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 SLC7A5P2Q9GIP4 190 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 SPRTNQ9H040 489 aaPredicted RBP11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 MANSC1Q9H8J5 431 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 EML4Q9HC35 981 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 DNAJC11Q9NVH1 559 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 OR6C2Q9NZP2 312 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 GPN3Q9UHW5 284 aaPredicted RBP11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 ICKQ9UPZ9 632 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 CPAMD8Q8IZJ3 1885 aa11.84□□□□□ -0.51
CLSTN3-208ENST00000538933 NBEAL1Q6ZS30 2694 aa11.83□□□□□ -0.51
CLSTN3-208ENST00000538933 HEATR5BQ9P2D3 2071 aa11.83□□□□□ -0.51
CLSTN3-208ENST00000538933 STAB1Q9NY15 2570 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 HCFC1P51610 2035 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 TMEM114B3SHH9 223 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 CLGNO14967 610 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 TAPBPO15533 448 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 CCNDBP1O95273 360 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 HSPA4LO95757 839 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 PVRP15151 417 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 MMP11P24347 488 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 GRK2P25098 689 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 SERPINB5P36952 375 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 GDF5P43026 501 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 CCNG1P51959 295 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 GUCY1A3Q02108 690 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 SRSF11Q05519 484 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 MFAP5Q13361 173 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 GTF2H2Q13888 395 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 FASTKQ14296 549 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 GRB7Q14451 532 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 SLC9A5Q14940 896 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 PDK4Q16654 411 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 TTC19Q6DKK2 380 aaPredicted RBP11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 GTF2H2CQ6P1K8 395 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 METTL2BQ6P1Q9 378 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 ISLR2Q6UXK2 745 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 LINC00696Q6ZRV3 163 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 THOC6Q86W42 341 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 RAB3IL1Q8TBN0 382 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 CKAP2Q8WWK9 683 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 L3HYPDHQ96EM0 354 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 MIPEPQ99797 713 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 HAUS8Q9BT25 410 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 ACAT2Q9BWD1 397 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 GATA5Q9BWX5 397 aaPredicted RBP11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 CAPS2Q9BXY5 557 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 LHPPQ9H008 270 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 KLHL25Q9H0H3 589 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 PCBD2Q9H0N5 130 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 FAM60AQ9NP50 221 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 SEMA4BQ9NPR2 832 aaPredicted RBP11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 SEMA3GQ9NS98 782 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 FAM53CQ9NYF3 392 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 IFT80Q9P2H3 777 aaPredicted RBP11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 TAC3Q9UHF0 121 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 SLC22A14Q9Y267 594 aa11.83□□□□□ -0.52
CLSTN3-208ENST00000538933 STK38LQ9Y2H1 464 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms