RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 DPY30Q9C005 99 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 KLHL4Q9C0H6 718 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 FOXJ2Q9P0K8 574 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 LRCH1Q9Y2L9 728 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 CACNA1GO43497 2377 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 PIEZO2Q9H5I5 2752 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 TCRBV3S1A0A5B6 114 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 SERTM1A2A2V5 107 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 KLHL33A6NCF5 533 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 MGAT4DA6NG13 374 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 TMX2-CTNND1H3BSU7 103 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 KLK10O43240 276 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 ZW10O43264 779 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 PRAMEF10O60809 474 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 TLE3Q04726 772 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 DMPKQ09013 629 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 BNIP2Q12982 314 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 EIF3IQ13347 325 aaKnown RBP11.42□□□□□ -0.58
CLIP1-208ENST00000537004 SQSTM1Q13501 440 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 DOC2AQ14183 400 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 RPE65Q16518 533 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 NANOGP8Q6NSW7 305 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 IGF2-ASQ6U949 168 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 WASH2PQ6VEQ5 465 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 FAM129CQ86XR2 697 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 GLB1L3Q8NCI6 653 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-208ENST00000537004 ZNF248Q8NDW4 579 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 RSC1A1Q92681 617 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 RNF31Q96EP0 1072 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 CMTM7Q96FZ5 175 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 LRGUKQ96M69 825 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 NRTNQ99748 197 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 COPS7BQ9H9Q2 264 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-208ENST00000537004 NANOGQ9H9S0 305 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 WASH6PQ9NQA3 447 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 IMP3Q9NV31 184 aaKnown RBP11.42□□□□□ -0.58
CLIP1-208ENST00000537004 OCIAD1Q9NX40 245 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 RIMS3Q9UJD0 308 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 DLGAP4Q9Y2H0 992 aa11.42□□□□□ -0.58
CLIP1-208ENST00000537004 SNRNP200O75643 2136 aaKnown RBP11.41□□□□□ -0.58
CLIP1-208ENST00000537004 C15orf38-AP3S2A0A0A6YYH1 394 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 C9orf172C9J069 976 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 NPIPB8E9PQR5 432 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 UBXN7O94888 489 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 ATP6V1B2P21281 511 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 PPP1CAP62136 330 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 FAM174BQ3ZCQ3 159 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 OGFRL1Q5TC84 451 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-208ENST00000537004 DLEU7Q6UYE1 221 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 LRRC69Q6ZNQ3 347 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 ARPINQ7Z6K5 226 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 TMEM126BQ8IUX1 230 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 LILRA2Q8N149 483 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 KRTCAP2Q8N6L1 136 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 ZNF480Q8WV37 535 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 KCNE4Q8WWG9 221 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 SLC13A3Q8WWT9 602 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 SH3KBP1Q96B97 665 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 INSM2Q96T92 566 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-208ENST00000537004 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-208ENST00000537004 ALG2Q9H553 416 aa11.41□□□□□ -0.58
CLIP1-208ENST00000537004 ATRXP46100 2492 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 ANKRD33BA6NCL7 494 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 LILRA5A6NI73 299 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 PEX1O43933 1283 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 IL6P05231 212 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 ACADLP28330 430 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 HNF4AP41235 474 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 GSK3BP49841 420 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 ZNF33BQ06732 778 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 PCDH1Q08174 1060 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 CSTF3Q12996 717 aaKnown RBP11.4□□□□□ -0.58
CLIP1-208ENST00000537004 SRSF6Q13247 344 aaKnown RBP11.4□□□□□ -0.58
CLIP1-208ENST00000537004 GRAMD1BQ3KR37 738 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 SFT2D3Q587I9 215 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 GRHL2Q6ISB3 625 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 WDR74Q6RFH5 385 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-208ENST00000537004 PDSS2Q86YH6 399 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 SYTL1Q8IYJ3 562 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 RNF175Q8N4F7 328 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 CLHC1Q8NHS4 586 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 WDR20Q8TBZ3 569 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 ZUFSPQ96AP4 578 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 DUS3LQ96G46 650 aaKnown RBP11.4□□□□□ -0.58
CLIP1-208ENST00000537004 C12orf66Q96MD2 445 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 PPM1MQ96MI6 270 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 TGM7Q96PF1 710 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 CLMPQ9H6B4 373 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 CPNE5Q9HCH3 593 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 POT1Q9NUX5 634 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 PDP2Q9P2J9 529 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 EGFL7Q9UHF1 273 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 TMED5Q9Y3A6 229 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 AP4S1Q9Y587 144 aa11.4□□□□□ -0.58
CLIP1-208ENST00000537004 DNMT3AQ9Y6K1 912 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-208ENST00000537004 CAPN5O15484 640 aaPredicted RBP11.4□□□□□ -0.59
CLIP1-208ENST00000537004 PRPS2P11908 318 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 AMD1P17707 334 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 MAPK1P28482 360 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 SLC7A1P30825 629 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms