RNA–Protein interactions for RNA: ENST00000536717.5

TNFRSF1A-209, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,503 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-209ENST00000536717 SMIM24O75264 130 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 CYC1P08574 325 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 ZNF888P0CJ79 500 aaPredicted RBP16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 SMIM10L1P0DMW3 83 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 C1GALT1C1LP0DN25 315 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 GFAPP14136 432 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 HSPA7P48741 367 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 RBBP5Q15291 538 aaKnown RBP16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 CCDC153Q494R4 210 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 MFSD4BQ5TF39 518 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 PRAMEF9Q5VWM5 478 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 CUZD1Q86UP6 607 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 EXOC3L1Q86VI1 746 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 ATCAYQ86WG3 371 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 KBTBD2Q8IY47 623 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 EFCAB3Q8N7B9 438 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 BANPQ8N9N5 519 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 TRPV3Q8NET8 790 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 PPP4R1Q8TF05 950 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 PEX11GQ96HA9 241 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 SMIM10Q96HG1 83 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 CNOT10Q9H9A5 744 aaKnown RBP16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 LANCL2Q9NS86 450 aa16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 PTBP2Q9UKA9 531 aaKnown RBP16.85■□□□□ 0.29
TNFRSF1A-209ENST00000536717 C4orf51C9J302 202 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 MTHFD2P13995 350 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 TAC1P20366 129 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 UQCRFS1P47985 274 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 OLR1P78380 273 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 SRSF1Q07955 248 aaKnown RBP eCLIP16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 ISLR2Q6UXK2 745 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 BRIX1Q8TDN6 353 aaKnown RBP16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 METTL21AQ8WXB1 218 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 IMMP1LQ96LU5 166 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 OR1F2PQ96R84 312 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 WDR77Q9BQA1 342 aaPredicted RBP16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 RBCK1Q9BYM8 510 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 KLHL31Q9H511 634 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 DNAJC11Q9NVH1 559 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 GPRC5BQ9NZH0 403 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 COPG2Q9UBF2 871 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 ASB1Q9Y576 335 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 POLEQ07864 2286 aa16.84■□□□□ 0.29
TNFRSF1A-209ENST00000536717 SPTBN1Q01082 2364 aaKnown RBP16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 IGHV3-20A0A0C4DH32 117 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 CLEC18AA5D8T8 446 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 DYNC1I1O14576 645 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 SPAG7O75391 227 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 STK16O75716 305 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 CDC123O75794 336 aaPredicted RBP16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 SASH3O75995 380 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 SERPINA7P05543 415 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 SERPINA6P08185 405 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 SOX11P35716 441 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 HNF4AP41235 474 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 ALDH18A1P54886 795 aaKnown RBP16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 RAB8AP61006 207 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 MFAP5Q13361 173 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 SLBPQ14493 270 aaKnown RBP eCLIP16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 PFKFB4Q16877 469 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 CRB2Q5IJ48 1285 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 AGBL2Q5U5Z8 902 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 CLEC18BQ6UXF7 455 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 TMIGD1Q6UXZ0 262 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 LINC00696Q6ZRV3 163 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 RIPOR1Q6ZS17 1223 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 ABHD13Q7L211 337 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 CPEB2Q7Z5Q1 589 aaKnown RBP16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 CCDC63Q8NA47 563 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 CLEC18CQ8NCF0 446 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 GALNT11Q8NCW6 608 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 SNRNP40Q96DI7 357 aaKnown RBP16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 C19orf60Q96EN9 201 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 TUBB6Q9BUF5 446 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 ILKAPQ9H0C8 392 aaPredicted RBP16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 EPS8L2Q9H6S3 715 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 SSU72Q9NP77 194 aaKnown RBP16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 ZNF446Q9NWS9 450 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 PLLPQ9Y342 182 aa16.83■□□□□ 0.28
TNFRSF1A-209ENST00000536717 SPTAN1Q13813 2472 aaKnown RBP16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 CHST10O43529 356 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 KLK8O60259 260 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 VPS4BO75351 444 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 ITGAMP11215 1152 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 CREB1P16220 341 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 EPORP19235 508 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 IL10P22301 178 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 SKP1P63208 163 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 RHAGQ02094 409 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 NIPAL1Q6NVV3 410 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 ANKRD37Q7Z713 158 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 TMEM151AQ8N4L1 468 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 SIRT6Q8N6T7 355 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 PLPP5Q8NEB5 264 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 LMF1Q96S06 567 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 CAPS2Q9BXY5 557 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 EHD1Q9H4M9 534 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 PTGFRNQ9P2B2 879 aa16.82■□□□□ 0.28
TNFRSF1A-209ENST00000536717 MID2Q9UJV3 735 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms