RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 PRPF31Q8WWY3 499 aaKnown RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 CRYGNQ8WXF5 182 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 TMEM190Q8WZ59 177 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ATP6V0A1Q93050 837 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 DTNBP1Q96EV8 351 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 SLC47A1Q96FL8 570 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 SIPA1Q96FS4 1042 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 CEP295NLQ96MC4 621 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ANKRD27Q96NW4 1050 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ALS2CR12Q96Q35 445 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 DDOQ99489 341 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 BPIFA3Q9BQP9 254 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ACAT2Q9BWD1 397 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 MRPL1Q9BYD6 325 aaKnown RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 TRIM7Q9C029 511 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 CLSTN2Q9H4D0 955 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ANKZF1Q9H8Y5 726 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 KCNMB3Q9NPA1 279 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 DDX19AQ9NUU7 478 aaKnown RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 SLC38A7Q9NVC3 462 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 INTS10Q9NVR2 710 aaKnown RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 COQ3Q9NZJ6 369 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 SUCLA2Q9P2R7 463 aaPredicted RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 SEC63Q9UGP8 760 aaKnown RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 TBX21Q9UL17 535 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 MRPL11Q9Y3B7 192 aaKnown RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 Q9Y3F1 56 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ASB3Q9Y575 518 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 GMEB1Q9Y692 573 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 NCOR1O75376 2440 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 DENND4AQ7Z401 1863 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ZNF638Q14966 1978 aaKnown RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 KLF18A0A0U1RQI7 1052 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 LNP1A1A4G5 178 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 F8VZ95 297 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 HAS3O00219 553 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 EIF3HO15372 352 aaKnown RBP eCLIP3.15□□□□□ -1.91
USP48-215ENST00000534705 SYNCRIPO60506 623 aaKnown RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 FMO6PO60774 539 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 ATP9AO75110 1047 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 N4BP1O75113 896 aaKnown RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 GCNT3O95395 438 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 CTDNEP1O95476 244 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 NR3C1P04150 777 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 H1F0P07305 194 aaKnown RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 LINGO3P0C6S8 592 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 PRSS56P0CW18 603 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 EPB41P11171 864 aaKnown RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 IDO1P14902 403 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 ZNF24P17028 368 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 MAPK3P27361 379 aaPredicted RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 TRPC1P48995 793 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 LIG4P49917 911 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 CD81P60033 236 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 PSMC6P62333 389 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 SCN1BQ07699 218 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 IFFO1Q0D2I5 559 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 SNX1Q13596 522 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 BTG3Q14201 252 aaPredicted RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 CASP8Q14790 479 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 GPNMBQ14956 572 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 FCN2Q15485 313 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 STXBP2Q15833 593 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 CLPPQ16740 277 aaPredicted RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 UBE2SQ16763 222 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 SGSM1Q2NKQ1 1148 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 C15orf59Q2T9L4 293 aaPredicted RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 SMU1Q2TAY7 513 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 GCNT6Q5T4J0 391 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 ARMCX5Q6P1M9 558 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 KLC3Q6P597 504 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 BLOC1S2Q6QNY1 142 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 CXCL17Q6UXB2 119 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 BZW1Q7L1Q6 419 aaKnown RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 LUZP1Q86V48 1076 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 PLD3Q8IV08 490 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 SYT2Q8N9I0 419 aaPredicted RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 POC5Q8NA72 575 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 TDRD5Q8NAT2 981 aaKnown RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 OR2T12Q8NG77 320 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 CENPTQ96BT3 561 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 PPP1R14BQ96C90 147 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 RBM41Q96IZ5 413 aaKnown RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 CARD6Q9BX69 1037 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 RTN4RQ9BZR6 473 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 TSGA10Q9BZW7 698 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 SEMA6AQ9H2E6 1030 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 HRH4Q9H3N8 390 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 SLC52A3Q9NQ40 469 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.15□□□□□ -1.91
USP48-215ENST00000534705 MIOSQ9NXC5 875 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 DDX43Q9NXZ2 648 aaKnown RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 VPS18Q9P253 973 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 HOOK1Q9UJC3 728 aaKnown RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 BARX2Q9UMQ3 279 aaPredicted RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 PPIEQ9UNP9 301 aaKnown RBP3.15□□□□□ -1.91
USP48-215ENST00000534705 ATP6V1DQ9Y5K8 247 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 UBIAD1Q9Y5Z9 338 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 OBSL1O75147 1896 aa3.15□□□□□ -1.91
USP48-215ENST00000534705 UMODL1Q5DID0 1318 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms