RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TMEM35AQ53FP2 167 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 ABHD17CQ6PCB6 329 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 MYLK4Q86YV6 388 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-208ENST00000532560 SLC22A9Q8IVM8 553 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 GALNT16Q8N428 558 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 FDCSPQ8NFU4 85 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 OR52B6Q8NGF0 335 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 TBC1D20Q96BZ9 403 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 C8orf44Q96CB5 159 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 REPS1Q96D71 796 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 NSUN5Q96P11 429 aaKnown RBP14.19□□□□□ -0.14
CPSF1-208ENST00000532560 QRFPRQ96P65 431 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 MESP1Q9BRJ9 268 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 NTMT1Q9BV86 223 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 NPLQ9BXD5 320 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-208ENST00000532560 ERVK-6Q9BXR3 956 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 ROPN1BQ9BZX4 212 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-208ENST00000532560 NOL11Q9H8H0 719 aaKnown RBP14.19□□□□□ -0.14
CPSF1-208ENST00000532560 ROPN1Q9HAT0 212 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-208ENST00000532560 ZBTB26Q9HCK0 441 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 ATP13A2Q9NQ11 1180 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 DMRT3Q9NQL9 472 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 LANCL2Q9NS86 450 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 LGALS13Q9UHV8 139 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 EMCNQ9ULC0 261 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 PCDHGB7Q9Y5F8 929 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 PCDHGA11Q9Y5H2 935 aa14.19□□□□□ -0.14
CPSF1-208ENST00000532560 TLN1Q9Y490 2541 aaKnown RBP14.19□□□□□ -0.14
CPSF1-208ENST00000532560 IGHV1-45A0A0A0MS14 117 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 ERICH4A6NGS2 130 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 FOXO6A8MYZ6 492 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 DLX3O60479 287 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 DNAJB6O75190 326 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 CLDN9O95484 217 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 RNH1P13489 461 aaKnown RBP14.18□□□□□ -0.14
CPSF1-208ENST00000532560 CRHR1P34998 444 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 PGDP52209 483 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 PLA2G16P53816 162 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 BTN3A2P78410 334 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 PHEXP78562 749 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 RHAGQ02094 409 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 C19orf57Q0VDD7 668 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 NFATC3Q12968 1075 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 GGTA1PQ4G0N0 100 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 MFSD4BQ5TF39 518 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 CA13Q8N1Q1 262 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 SRFBP1Q8NEF9 429 aaKnown RBP14.18□□□□□ -0.14
CPSF1-208ENST00000532560 HUS1BQ8NHY5 278 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 ADAMTS18Q8TE60 1221 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 METTL21AQ8WXB1 218 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 ATP6V1E2Q96A05 226 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 CMTM7Q96FZ5 175 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 KCNC2Q96PR1 638 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 TMEM237Q96Q45 408 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 RBCK1Q9BYM8 510 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 ROGDIQ9GZN7 287 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 GPR83Q9NYM4 423 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 RNF11Q9Y3C5 154 aa14.18□□□□□ -0.14
CPSF1-208ENST00000532560 SMG1Q96Q15 3661 aaKnown RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 NSG1A0A0A6YYJ2 146 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 A0A0G2JN53 185 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 A6NL46 340 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 K7EM74 188 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 MASP2O00187 686 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 PSMD12O00232 456 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 B3GALT2O43825 422 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 KLHL41O60662 606 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 CDC123O75794 336 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 OTCP00480 354 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 PROCP04070 461 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 PDGFAP04085 211 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 KRT4P19013 534 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 CCT5P48643 541 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 MTTPP55157 894 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 EEF1A2Q05639 463 aaKnown RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 SLC18A2Q05940 514 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 MYBPC3Q14896 1274 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 PCOLCEQ15113 449 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 CPSF6Q16630 551 aaKnown RBP eCLIP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 CCDC153Q494R4 210 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 ZNF678Q5SXM1 525 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 C10orf62Q5T681 223 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 VWA5B1Q5TIE3 1220 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 KHDRBS2Q5VWX1 349 aaKnown RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 FAAH2Q6GMR7 532 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 QSOX2Q6ZRP7 698 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 ASB18Q6ZVZ8 466 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 CHSY3Q70JA7 882 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 NDUFAF7Q7L592 441 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 IQCKQ8N0W5 287 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 PLPP5Q8NEB5 264 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 WDR20Q8TBZ3 569 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 L3HYPDHQ96EM0 354 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 MAGEB10Q96LZ2 347 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 CDK15Q96Q40 435 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 F2RL3Q96RI0 385 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 SERINC2Q96SA4 455 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 SMAD5Q99717 465 aaKnown RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 TBCDQ9BTW9 1192 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 TMEM109Q9BVC6 243 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms