RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.6□□□□□ -0.876e-7■■■■■ 139.2
VPS28-204ENST00000526054 TMEM151AQ8N4L1 468 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 BANPQ8N9N5 519 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 ZNF740Q8NDX6 193 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 TRPV3Q8NET8 790 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 ATP6V1E2Q96A05 226 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 NACC2Q96BF6 587 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 MAGEB10Q96LZ2 347 aaPredicted RBP9.6□□□□□ -0.87
VPS28-204ENST00000526054 C10orf90Q96M02 699 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 WDR77Q9BQA1 342 aaPredicted RBP9.6□□□□□ -0.87
VPS28-204ENST00000526054 C1QTNF3Q9BXJ4 246 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 ERVK-6Q9BXR3 956 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 DRC3Q9H069 523 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 IPPKQ9H8X2 491 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 WDR54Q9H977 334 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 ACTR8Q9H981 624 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 SYNPO2LQ9H987 977 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 ZBTB20Q9HC78 741 aaPredicted RBP9.6□□□□□ -0.87
VPS28-204ENST00000526054 SLC22A11Q9NSA0 550 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 COPG2Q9UBF2 871 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 NXT1Q9UKK6 140 aaKnown RBP9.6□□□□□ -0.87
VPS28-204ENST00000526054 PCTPQ9UKL6 214 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 EMCNQ9ULC0 261 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 CDC14AQ9UNH5 594 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 STK38LQ9Y2H1 464 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 COPG1Q9Y678 874 aaKnown RBP9.6□□□□□ -0.87
VPS28-204ENST00000526054 CENPEQ02224 2701 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 DOCK10Q96BY6 2186 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 ANKDD1BA6NHY2 528 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 SPAG7O75391 227 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 WFS1O76024 890 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 SUPT7LO94864 414 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 CLDN1O95832 211 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 OTCP00480 354 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 ALBP02768 609 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 STATHP02808 62 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 SERPINB1P30740 379 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 AVPR1BP47901 424 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 NAA20P61599 178 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 STXBP1P61764 594 aaKnown RBP9.59□□□□□ -0.87
VPS28-204ENST00000526054 PHEXP78562 749 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 FAM53BQ14153 422 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 E2F2Q14209 437 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 RBBP7Q16576 425 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 NKG7Q16617 165 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 TUBB8Q3ZCM7 444 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 ZNF678Q5SXM1 525 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 LIPJQ5W064 366 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 ZNF787Q6DD87 383 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 TMEM214Q6NUQ4 689 aaKnown RBP9.59□□□□□ -0.87
VPS28-204ENST00000526054 NIPAL1Q6NVV3 410 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 MED27Q6P2C8 311 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 SHISA6Q6ZSJ9 500 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 COX15Q7KZN9 410 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 ABHD13Q7L211 337 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 OVCH1Q7RTY7 1134 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 METTL27Q8N6F8 245 aaPredicted RBP9.59□□□□□ -0.87
VPS28-204ENST00000526054 ANKRD53Q8N9V6 530 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 ZCCHC10Q8TBK6 192 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 NT5CQ8TCD5 201 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 ZNF483Q8TF39 744 aaPredicted RBP9.59□□□□□ -0.87
VPS28-204ENST00000526054 CCT6BQ92526 530 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 REPS1Q96D71 796 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 TM4SF19Q96DZ7 209 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 L3HYPDHQ96EM0 354 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 PGM2Q96G03 612 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 TMEM237Q96Q45 408 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 SPSB2Q99619 263 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 SLC26A1Q9H2B4 701 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 SOX17Q9H6I2 414 aaPredicted RBP9.59□□□□□ -0.87
VPS28-204ENST00000526054 NOL11Q9H8H0 719 aaKnown RBP9.59□□□□□ -0.87
VPS28-204ENST00000526054 ANKHQ9HCJ1 492 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 ZNF304Q9HCX3 659 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 SEMA4BQ9NPR2 832 aaPredicted RBP9.59□□□□□ -0.87
VPS28-204ENST00000526054 AGPAT4Q9NRZ5 378 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 CTSFQ9UBX1 484 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 ADGRE2Q9UHX3 823 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 NTNG1Q9Y2I2 539 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 PLLPQ9Y342 182 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 CSAG2Q9Y5P2 127 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 HS3ST3B1Q9Y662 390 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 SCN3AQ9NY46 2000 aa9.59□□□□□ -0.87
VPS28-204ENST00000526054 CRYBG3Q68DQ2 2970 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 WIPF3A6NGB9 483 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 SOCS6O14544 535 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 PRAMEF4O60810 478 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 CLEC3AO75596 197 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 NSA2O95478 260 aaKnown RBP9.58□□□□□ -0.88
VPS28-204ENST00000526054 CLDN9O95484 217 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 MLYCDO95822 493 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 ONECUT2O95948 504 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 SERPINA6P08185 405 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 PCNAP12004 261 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 CPA3P15088 417 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 CD22P20273 847 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 IMPDH1P20839 514 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 FBLP22087 321 aaKnown RBP9.58□□□□□ -0.88
VPS28-204ENST00000526054 COL8A1P27658 744 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 DCTP40126 519 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 CLCQ05315 142 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms