RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 OR4C11Q6IEV9 310 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 NIPAL1Q6NVV3 410 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 FOXR1Q6PIV2 292 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 ZNF574Q6ZN55 896 aaPredicted RBP12.42□□□□□ -0.42
CPNE3-205ENST00000522240 CCDC121Q6ZUS5 278 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 IKBIPQ70UQ0 350 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 YTHDF3Q7Z739 585 aaKnown RBP12.42□□□□□ -0.42
CPNE3-205ENST00000522240 TREML1Q86YW5 311 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 OR4N4Q8N0Y3 316 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 ARHGEF39Q8N4T4 335 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 GLB1L3Q8NCI6 653 aaPredicted RBP12.42□□□□□ -0.42
CPNE3-205ENST00000522240 PRR7Q8TB68 274 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 UTP15Q8TED0 518 aaKnown RBP12.42□□□□□ -0.42
CPNE3-205ENST00000522240 TSPEARQ8WU66 669 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 N4BP2L2Q92802 583 aaPredicted RBP12.42□□□□□ -0.42
CPNE3-205ENST00000522240 CMTM5Q96DZ9 223 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 SMIM10Q96HG1 83 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 CCDC74BQ96LY2 380 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 TUBB6Q9BUF5 446 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 EBPLQ9BY08 206 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 ACTL8Q9H568 366 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 FANCEQ9HB96 536 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 MYNNQ9NPC7 610 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 CDV3Q9UKY7 258 aaKnown RBP12.42□□□□□ -0.42
CPNE3-205ENST00000522240 WBP11Q9Y2W2 641 aaKnown RBP12.42□□□□□ -0.42
CPNE3-205ENST00000522240 PCDHGA1Q9Y5H4 931 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 SLC22A7Q9Y694 548 aa12.42□□□□□ -0.42
CPNE3-205ENST00000522240 ASCC3Q8N3C0 2202 aaKnown RBP12.42□□□□□ -0.42
CPNE3-205ENST00000522240 A0A0A6YYD5 115 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 GNG14A0A1W2PPG7 69 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 ARHGAP10A1A4S6 786 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 DYTNA2CJ06 578 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 POM121CA8CG34 1229 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 HCRTR1O43613 425 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 HNRNPCL1O60812 293 aaKnown RBP12.41□□□□□ -0.42
CPNE3-205ENST00000522240 RFPL3O75679 317 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 SLC22A3O75751 556 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 STATHP02808 62 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 ZNF888P0CJ79 500 aaPredicted RBP12.41□□□□□ -0.42
CPNE3-205ENST00000522240 ALOX12P18054 663 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 PRPS1L1P21108 318 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 HIST1H1TP22492 207 aaPredicted RBP12.41□□□□□ -0.42
CPNE3-205ENST00000522240 TACR1P25103 407 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 RPL3P39023 403 aaKnown RBP12.41□□□□□ -0.42
CPNE3-205ENST00000522240 SEPHS1P49903 392 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 PLA2G16P53816 162 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 SKP1P63208 163 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 E2F1Q01094 437 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 ACY1Q03154 408 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 PTGR1Q14914 329 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 NDUFA9Q16795 377 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 DPY19L1Q2PZI1 675 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 HKDC1Q2TB90 917 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 AGKQ53H12 422 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 SNAP47Q5SQN1 464 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 CYB5D1Q6P9G0 228 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 ZNF793Q6ZN11 406 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 GLRX5Q86SX6 157 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 KCT2Q8NC54 265 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 RP9Q8TA86 221 aaKnown RBP12.41□□□□□ -0.42
CPNE3-205ENST00000522240 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.41□□□□□ -0.42
CPNE3-205ENST00000522240 PROKR1Q8TCW9 393 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 TESCQ96BS2 214 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 TMEM74Q96NL1 305 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 TSSK3Q96PN8 268 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 TEFMQ96QE5 360 aaKnown RBP12.41□□□□□ -0.42
CPNE3-205ENST00000522240 ZBTB18Q99592 522 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 C17orf62Q9BQA9 187 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 PRR14Q9BWN1 585 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 DPY30Q9C005 99 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 KLHL31Q9H511 634 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 COPS7BQ9H9Q2 264 aaPredicted RBP12.41□□□□□ -0.42
CPNE3-205ENST00000522240 LYARQ9NX58 379 aaKnown RBP12.41□□□□□ -0.42
CPNE3-205ENST00000522240 TAGLN3Q9UI15 199 aa12.41□□□□□ -0.42
CPNE3-205ENST00000522240 USP24Q9UPU5 2620 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 FAM234BA2RU67 622 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 BBIP1A8MTZ0 92 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 H3BMH7 237 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 RTCAO00442 366 aaKnown RBP12.4□□□□□ -0.42
CPNE3-205ENST00000522240 CASC3O15234 703 aaKnown RBP12.4□□□□□ -0.42
CPNE3-205ENST00000522240 GDF9O60383 454 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 EEDO75530 441 aaKnown RBP12.4□□□□□ -0.42
CPNE3-205ENST00000522240 KIAA0754O94854 1291 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 EIF2S1P05198 315 aaKnown RBP12.4□□□□□ -0.42
CPNE3-205ENST00000522240 KLK1P06870 262 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 COX4I1P13073 169 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 CALB2P22676 271 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 ATP5A1P25705 553 aaKnown RBP12.4□□□□□ -0.42
CPNE3-205ENST00000522240 CCKBRP32239 447 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 HPCAL1P37235 193 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 MAPK12P53778 367 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 MTTPP55157 894 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 UFM1P61960 85 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 ZFP36L1Q07352 338 aaKnown RBP12.4□□□□□ -0.42
CPNE3-205ENST00000522240 BNIP1Q12981 228 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 GRM7Q14831 915 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 WASHC2DQ5SRD0 308 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 CCNYL2Q5T2Q4 361 aa12.4□□□□□ -0.42
CPNE3-205ENST00000522240 YOD1Q5VVQ6 348 aaPredicted RBP12.4□□□□□ -0.42
CPNE3-205ENST00000522240 MRM1Q6IN84 353 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms