RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CPPED1Q9BRF8 314 aaPredicted RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 KCNH6Q9H252 994 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 RLIMQ9NVW2 624 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 FBXO9Q9UK97 447 aaPredicted RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 AP3M1Q9Y2T2 418 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 CMAHPQ9Y471 501 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 PCDHGB3Q9Y5G1 929 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 STK16O75716 305 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 CCNB2O95067 398 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 HIST1H2AGP0C0S8 130 aaPredicted RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 HIST1H2ADP20671 130 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 RPS19P39019 145 aaKnown RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 SLC9A3P48764 834 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 ATN1P54259 1190 aaPredicted RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 PCBP2Q15366 365 aaKnown RBP eCLIP9.28□□□□□ -0.929e-7■■■□□ 15.9
VCAN-210ENST00000513960 EXOC3L2Q2M3D2 409 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 FBXO43Q4G163 708 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 Q5BKY6 102 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 LCN1P1Q5VSP4 162 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 POF1BQ8WVV4 589 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 PDLIM5Q96HC4 596 aaKnown RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 HIST1H2AHQ96KK5 128 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 MTERF1Q99551 399 aaKnown RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 HIST1H2AJQ99878 128 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 H2AFJQ9BTM1 129 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 ACAT2Q9BWD1 397 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 RNF121Q9H920 327 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 CCDC59Q9P031 241 aaKnown RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 FZD4Q9ULV1 537 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.27□□□□□ -0.92
VCAN-210ENST00000513960 AOC2O75106 756 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 PRAMEF12O95522 483 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 CD160O95971 181 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 PDYNP01213 254 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 CLEC2LP0C7M8 214 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 PPIGQ13427 754 aaKnown RBP eCLIP9.27□□□□□ -0.92
VCAN-210ENST00000513960 BOP1Q14137 746 aaKnown RBP9.27□□□□□ -0.92
VCAN-210ENST00000513960 GPNMBQ14956 572 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 IQCCQ4KMZ1 466 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 TPGS2Q68CL5 300 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 LRRC66Q68CR7 880 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 C22orf42Q6IC83 251 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 ASB18Q6ZVZ8 466 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 DNAJB7Q7Z6W7 309 aaPredicted RBP9.27□□□□□ -0.92
VCAN-210ENST00000513960 PXYLP1Q8TE99 480 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 APH1BQ8WW43 257 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 TMEM169Q96HH4 297 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 IGSF21Q96ID5 467 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 P2RY12Q9H244 342 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 TMEM45AQ9NWC5 275 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 RABL2AQ9UBK7 228 aaPredicted RBP9.27□□□□□ -0.92
VCAN-210ENST00000513960 RAB23Q9ULC3 237 aa9.27□□□□□ -0.92
VCAN-210ENST00000513960 A0A1W2PQL4 384 aaPredicted RBP9.27□□□□□ -0.93
VCAN-210ENST00000513960 K7ERQ8 282 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 WNT9AO14904 365 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 CLDN9O95484 217 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 SLC2A2P11168 524 aaPredicted RBP9.27□□□□□ -0.93
VCAN-210ENST00000513960 MRPL19P49406 292 aaKnown RBP9.27□□□□□ -0.93
VCAN-210ENST00000513960 EPHB3P54753 998 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 POU6F2P78424 691 aaPredicted RBP9.27□□□□□ -0.93
VCAN-210ENST00000513960 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.27□□□□□ -0.93
VCAN-210ENST00000513960 TATDN3Q17R31 274 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 PLEKHM3Q6ZWE6 761 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 ARL14EPQ8N8R7 260 aaPredicted RBP9.27□□□□□ -0.93
VCAN-210ENST00000513960 OR6C4Q8NGE1 309 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 TP53INP1Q96A56 240 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 WACQ9BTA9 647 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 BOCQ9BWV1 1114 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 MCUBQ9NWR8 336 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 LSM7Q9UK45 103 aaKnown RBP9.27□□□□□ -0.93
VCAN-210ENST00000513960 SLC9A8Q9Y2E8 581 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.27□□□□□ -0.93
VCAN-210ENST00000513960 CASKO14936 926 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 GPX5O75715 221 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 MYCP01106 439 aaPredicted RBP9.27□□□□□ -0.93
VCAN-210ENST00000513960 MAPK1P28482 360 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 CSNK2BP67870 215 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 GPR50Q13585 617 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 SNAPC1Q16533 368 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 TTLL9Q3SXZ7 439 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 CASP12Q6UXS9 341 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 PHC2Q8IXK0 858 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 VWA5B2Q8N398 1253 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 DCAF4L2Q8NA75 395 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 SLC37A3Q8NCC5 494 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 ASIC4Q96FT7 647 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 HDHD5Q9BXW7 423 aa9.27□□□□□ -0.93
VCAN-210ENST00000513960 PPIL3Q9H2H8 161 aaKnown RBP9.27□□□□□ -0.93
VCAN-210ENST00000513960 PIPSLA2A3N6 862 aa9.26□□□□□ -0.93
VCAN-210ENST00000513960 PITPNM1O00562 1244 aa9.26□□□□□ -0.93
VCAN-210ENST00000513960 TNNI3P19429 210 aa9.26□□□□□ -0.93
VCAN-210ENST00000513960 ERP29P30040 261 aaKnown RBP9.26□□□□□ -0.93
VCAN-210ENST00000513960 GGT2P36268 569 aa9.26□□□□□ -0.93
VCAN-210ENST00000513960 FAPQ12884 760 aa9.26□□□□□ -0.93
VCAN-210ENST00000513960 MZT2BQ6NZ67 158 aa9.26□□□□□ -0.93
VCAN-210ENST00000513960 SBSNQ6UWP8 590 aa9.26□□□□□ -0.93
VCAN-210ENST00000513960 USP30Q70CQ3 517 aa9.26□□□□□ -0.93
VCAN-210ENST00000513960 BPHLQ86WA6 291 aaPredicted RBP9.26□□□□□ -0.93
VCAN-210ENST00000513960 KIAA1958Q8N8K9 716 aa9.26□□□□□ -0.93
VCAN-210ENST00000513960 ZFP41Q8N8Y5 198 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms