RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 LAMP5Q9UJQ1 280 aa10.87□□□□□ -0.67
LIMCH1-208ENST00000508501 SALL3Q9BXA9 1300 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 TOR1AO14656 332 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 PAGE1O75459 146 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 PSMD10O75832 226 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 AHCYP23526 432 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 NDUFS1P28331 727 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 PCK2Q16822 640 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 DUSP7Q16829 419 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 WSCD1Q658N2 575 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 METAP1DQ6UB28 335 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 IQCHQ86VS3 1027 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 GALNT13Q8IUC8 556 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 RGMAQ96B86 450 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 MFSD3Q96ES6 412 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 ATG10Q9H0Y0 220 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 ADAM18Q9Y3Q7 739 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 TBC1D3BA6NDS4 549 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 HDCP19113 662 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 MMP12P39900 470 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 STT3AP46977 705 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 GAD2Q05329 585 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 GANABQ14697 944 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC36A3Q495N2 470 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 NAT16Q8N8M0 369 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 GPR151Q8TDV0 419 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 RSC1A1Q92681 617 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 ARMC5Q96C12 935 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 CMTM7Q96FZ5 175 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 ANKRD60Q9BZ19 345 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 TM6SF2Q9BZW4 377 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 TXNL4BQ9NX01 149 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 TIMM13Q9Y5L4 95 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 LRRC7Q96NW7 1537 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 H0YGN5 161 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 BHLHE40O14503 412 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 OR7A17O14581 309 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 SEC14L2O76054 403 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC22A5O76082 557 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 PNPP00491 289 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 HBE1P02100 147 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 PRNPP04156 253 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 BMP2P12643 396 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 PTPRAP18433 802 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 WEE1P30291 646 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 FRG2Q64ET8 278 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 GPR139Q6DWJ6 353 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 OR7D4Q8NG98 312 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 HS6ST2Q96MM7 605 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 ZNF599Q96NL3 588 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 FRG2BQ96QU4 278 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 ACO2Q99798 780 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 BEX2Q9BXY8 128 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 BEX1Q9HBH7 125 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 FAM53CQ9NYF3 392 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 WNT9AO14904 365 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 MAFO75444 373 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 EBLN1P0CF75 366 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 CHRM1P11229 460 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 GGT1P19440 569 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 AMY2BP19961 511 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 TCEA1P23193 301 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 ETV5P41161 510 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 ASPAP45381 313 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 TPMTP51580 245 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 TAS2R30P59541 319 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 PAN2Q504Q3 1202 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 CYBRD1Q53TN4 286 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 MAP1SQ66K74 1059 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 S100A7AQ86SG5 101 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 PARGQ86W56 976 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 LAS2Q8IYD9 372 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 NAT8LQ8N9F0 302 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 PYCR2Q96C36 320 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 KCNH6Q9H252 994 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 ABCB8Q9NUT2 735 aa10.86□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC15A5A6NIM6 579 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 FFAR2O15552 330 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 MFSD11O43934 449 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 IL1BP01584 269 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 EPHX2P34913 555 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 THBS3P49746 956 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 MAXP61244 160 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 RPP30P78346 268 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 RHBDF2Q6PJF5 856 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 CEACAM19Q7Z692 300 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 MINDY1Q8N5J2 469 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ACBD7Q8N6N7 88 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC35B2Q8TB61 432 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ZDHHC7Q9NXF8 308 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 TMEM181Q9P2C4 612 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 A8MT66 165 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 PIAS1O75925 651 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 LTKP29376 864 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 JAM2P57087 298 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ZNF33AQ06730 810 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ARHGAP1Q07960 439 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 CHAF1BQ13112 559 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ENPP2Q13822 863 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 MEF2DQ14814 521 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms