RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 DMRT3Q9NQL9 472 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 MRPS2Q9Y399 296 aaKnown RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 FIS1Q9Y3D6 152 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 TSC22D4Q9Y3Q8 395 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 TMEM184BQ9Y519 407 aaPredicted RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 SPENQ96T58 3664 aaKnown RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 A0A1B0GX78 115 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 LRIT2A6NDA9 550 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 MAGEB17A8MXT2 336 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 FOXE1O00358 373 aaPredicted RBP9.52□□□□□ -0.89
NUP54-203ENST00000504173 DSCR3O14972 297 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 AZIN1O14977 448 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 EFSO43281 561 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 ITM2AO43736 263 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 RAD1O60671 282 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 SH3BGRLO75368 114 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 ULK1O75385 1050 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 SNUPNO95149 360 aaKnown RBP9.52□□□□□ -0.89
NUP54-203ENST00000504173 MED26O95402 600 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 DLGAP3O95886 979 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 TGFB1P01137 390 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 KLK3P07288 261 aaPredicted RBP9.52□□□□□ -0.89
NUP54-203ENST00000504173 ZNF888P0CJ79 500 aaPredicted RBP9.52□□□□□ -0.89
NUP54-203ENST00000504173 UROSP10746 265 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 AGXTP21549 392 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 HNRNPH1P31943 449 aaKnown RBP9.52□□□□□ -0.89
NUP54-203ENST00000504173 GCGRP47871 477 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 SLC1A6P48664 564 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 FOXA1P55317 472 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 TGM3Q08188 693 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 BST1Q10588 318 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 CLN3Q13286 438 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 FAM53BQ14153 422 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 SH2D4BQ5SQS7 431 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 CES4AQ5XG92 561 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 FAM219BQ5XKK7 198 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 CLEC6AQ6EIG7 209 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 C6orf15Q6UXA7 325 aaPredicted RBP9.52□□□□□ -0.89
NUP54-203ENST00000504173 ABHD13Q7L211 337 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 RNF175Q8N4F7 328 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 ESX1Q8N693 406 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 METTL27Q8N6F8 245 aaPredicted RBP9.52□□□□□ -0.89
NUP54-203ENST00000504173 SLC38A9Q8NBW4 561 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 RAB3IL1Q8TBN0 382 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 LRRC8CQ8TDW0 803 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 MR1Q95460 341 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 GAL3ST3Q96A11 431 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 CMTM7Q96FZ5 175 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 LRFN5Q96NI6 719 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 GBP5Q96PP8 586 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 CENPKQ9BS16 269 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 MS4A8Q9BY19 250 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 REXO4Q9GZR2 422 aaKnown RBP9.52□□□□□ -0.89
NUP54-203ENST00000504173 KLHL31Q9H511 634 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 MANSC1Q9H8J5 431 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 ZNF395Q9H8N7 513 aaPredicted RBP9.52□□□□□ -0.89
NUP54-203ENST00000504173 ANKHQ9HCJ1 492 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 TNFRSF12AQ9NP84 129 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 WDR70Q9NW82 654 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 ACSL6Q9UKU0 697 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 CDC14AQ9UNH5 594 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 TIMM22Q9Y584 194 aa9.52□□□□□ -0.89
NUP54-203ENST00000504173 A0A0A6YYC8 382 aaPredicted RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 I3L1I5 382 aaPredicted RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 MEN1O00255 615 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 ERI3O43414 337 aaKnown RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 TBX6O95947 436 aaPredicted RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 CHEK2O96017 543 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 PDYNP01213 254 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 CCNYL3P0C7X3 344 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 ALOX12P18054 663 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 IL1RNP18510 177 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 PTX3P26022 381 aaPredicted RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 SERPINB3P29508 390 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 ARRB2P32121 409 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 RORAP35398 523 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 AVPR1BP47901 424 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 HTR6P50406 440 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 RAP1GDS1P52306 607 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 PLA2G16P53816 162 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 RAB8AP61006 207 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 SKP1P63208 163 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 ABHD18Q0P651 414 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 HYAL2Q12891 473 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 MAP7Q14244 749 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 HERC3Q15034 1050 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 DEFB134Q4QY38 66 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 TMEM35AQ53FP2 167 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 DEPDC1Q5TB30 811 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 KHDRBS2Q5VWX1 349 aaKnown RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 KANK2Q63ZY3 851 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 PRMT9Q6P2P2 845 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 TRIM40Q6P9F5 258 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 CHSY3Q70JA7 882 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 TIPARPQ7Z3E1 657 aaKnown RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 HOMEZQ8IX15 550 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 DSELQ8IZU8 1212 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 NLGN4XQ8N0W4 816 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 ARHGEF39Q8N4T4 335 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 DTWD1Q8N5C7 304 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms