RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 NCBP2P52298 156 aaKnown RBP eCLIP8□□□□□ -1.13
USP54-215ENST00000497106 NXPH1P58417 271 aa8□□□□□ -1.13
USP54-215ENST00000497106 RELAQ04206 551 aa8□□□□□ -1.13
USP54-215ENST00000497106 STX4Q12846 297 aa8□□□□□ -1.13
USP54-215ENST00000497106 GARNL3Q5VVW2 1013 aa8□□□□□ -1.13
USP54-215ENST00000497106 CES4AQ5XG92 561 aa8□□□□□ -1.13
USP54-215ENST00000497106 HLA-DQA1Q5Y7H0 255 aa8□□□□□ -1.13
USP54-215ENST00000497106 NANOGP8Q6NSW7 305 aa8□□□□□ -1.13
USP54-215ENST00000497106 RRM2BQ7LG56 351 aa8□□□□□ -1.13
USP54-215ENST00000497106 ARL10Q8N8L6 244 aa8□□□□□ -1.13
USP54-215ENST00000497106 PROKR1Q8TCW9 393 aa8□□□□□ -1.13
USP54-215ENST00000497106 EZH1Q92800 747 aaPredicted RBP8□□□□□ -1.13
USP54-215ENST00000497106 SLC47A1Q96FL8 570 aa8□□□□□ -1.13
USP54-215ENST00000497106 REXO5Q96IC2 774 aaKnown RBP8□□□□□ -1.13
USP54-215ENST00000497106 CLPTM1LQ96KA5 538 aa8□□□□□ -1.13
USP54-215ENST00000497106 SLC35A5Q9BS91 424 aa8□□□□□ -1.13
USP54-215ENST00000497106 NDC1Q9BTX1 674 aa8□□□□□ -1.13
USP54-215ENST00000497106 OSBPL10Q9BXB5 764 aa8□□□□□ -1.13
USP54-215ENST00000497106 ACTL8Q9H568 366 aa8□□□□□ -1.13
USP54-215ENST00000497106 CAAP1Q9H8G2 361 aa8□□□□□ -1.13
USP54-215ENST00000497106 NANOGQ9H9S0 305 aa8□□□□□ -1.13
USP54-215ENST00000497106 DDX18Q9NVP1 670 aaKnown RBP8□□□□□ -1.13
USP54-215ENST00000497106 TMEM181Q9P2C4 612 aa8□□□□□ -1.13
USP54-215ENST00000497106 MUTYHQ9UIF7 546 aa8□□□□□ -1.13
USP54-215ENST00000497106 DENND4CQ5VZ89 1909 aa8□□□□□ -1.13
USP54-215ENST00000497106 PRORSD1PA6NEY8 169 aa8□□□□□ -1.13
USP54-215ENST00000497106 TMEM150CB9EJG8 249 aa8□□□□□ -1.13
USP54-215ENST00000497106 LMO7DNF2Z398 122 aa8□□□□□ -1.13
USP54-215ENST00000497106 TMX2-CTNND1H3BSU7 103 aa8□□□□□ -1.13
USP54-215ENST00000497106 SOX1O00570 391 aaPredicted RBP8□□□□□ -1.13
USP54-215ENST00000497106 NTRK1P04629 796 aa8□□□□□ -1.13
USP54-215ENST00000497106 NR2F1P10589 423 aa8□□□□□ -1.13
USP54-215ENST00000497106 ERGP11308 486 aa8□□□□□ -1.13
USP54-215ENST00000497106 ENGP17813 658 aa8□□□□□ -1.13
USP54-215ENST00000497106 ATP6V1C1P21283 382 aa8□□□□□ -1.13
USP54-215ENST00000497106 RRM2P31350 389 aa8□□□□□ -1.13
USP54-215ENST00000497106 FNTBP49356 437 aa8□□□□□ -1.13
USP54-215ENST00000497106 ACY1Q03154 408 aa8□□□□□ -1.13
USP54-215ENST00000497106 RFX4Q33E94 735 aa8□□□□□ -1.13
USP54-215ENST00000497106 TMEM31Q5JXX7 168 aa8□□□□□ -1.13
USP54-215ENST00000497106 YOD1Q5VVQ6 348 aaPredicted RBP8□□□□□ -1.13
USP54-215ENST00000497106 C16orf62Q7Z3J2 963 aa8□□□□□ -1.13
USP54-215ENST00000497106 ENDOVQ8N8Q3 282 aaKnown RBP8□□□□□ -1.13
USP54-215ENST00000497106 OR10A6Q8NH74 314 aa8□□□□□ -1.13
USP54-215ENST00000497106 NR4A3Q92570 626 aa8□□□□□ -1.13
USP54-215ENST00000497106 RSC1A1Q92681 617 aa8□□□□□ -1.13
USP54-215ENST00000497106 NPLQ9BXD5 320 aaPredicted RBP8□□□□□ -1.13
USP54-215ENST00000497106 TPT1P8Q9HAU6 139 aa8□□□□□ -1.13
USP54-215ENST00000497106 CUEDC1Q9NWM3 386 aaPredicted RBP8□□□□□ -1.13
USP54-215ENST00000497106 HCN2Q9UL51 889 aa8□□□□□ -1.13
USP54-215ENST00000497106 CFL2Q9Y281 166 aa8□□□□□ -1.13
USP54-215ENST00000497106 SLC9A8Q9Y2E8 581 aa8□□□□□ -1.13
USP54-215ENST00000497106 CHD5Q8TDI0 1954 aa8□□□□□ -1.13
USP54-215ENST00000497106 FEZF1A0PJY2 475 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 IGHV4-34P06331 123 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 TYRP1P17643 537 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 HOXA6P31267 233 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 SLC19A1P41440 591 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 SIM2Q14190 667 aaPredicted RBP7.99□□□□□ -1.13
USP54-215ENST00000497106 ZBTB49Q6ZSB9 765 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 ST13P4Q8IZP2 240 aaPredicted RBP7.99□□□□□ -1.13
USP54-215ENST00000497106 ZCCHC7Q8N3Z6 543 aaKnown RBP7.99□□□□□ -1.13
USP54-215ENST00000497106 SFXN5Q8TD22 340 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 ADAMTS15Q8TE58 950 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 SLC37A2Q8TED4 501 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 PYDC1Q8WXC3 89 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 GUCD1Q96NT3 240 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 NDEL1Q9GZM8 345 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 ACSS1Q9NUB1 689 aaPredicted RBP7.99□□□□□ -1.13
USP54-215ENST00000497106 MAN2B2Q9Y2E5 1009 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 ASB1Q9Y576 335 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 PCDHGA7Q9Y5G6 932 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 TLCD2A6NGC4 264 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 ARPC2O15144 300 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 RAP2AP10114 183 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 RNH1P13489 461 aaKnown RBP7.99□□□□□ -1.13
USP54-215ENST00000497106 ZNF23P17027 643 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 GPR3P46089 330 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 DSTNP60981 165 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 RHDQ02161 417 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 SLAMF1Q13291 335 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 LCN8Q6JVE9 175 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 SLC15A3Q8IY34 581 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 KRTCAP2Q8N6L1 136 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 C19orf47Q8N9M1 422 aaKnown RBP7.99□□□□□ -1.13
USP54-215ENST00000497106 OR4K14Q8NGD5 310 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 CCDC115Q96NT0 180 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 P2RX2Q9UBL9 471 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 GPN3Q9UHW5 284 aaPredicted RBP7.99□□□□□ -1.13
USP54-215ENST00000497106 PLEKHM1Q9Y4G2 1056 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 PRRC2BQ5JSZ5 2229 aaKnown RBP7.99□□□□□ -1.13
USP54-215ENST00000497106 C9JVG2 144 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 ALBP02768 609 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 ZCCHC18P0CG32 403 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 IFNGR2P38484 337 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 ZNF423Q2M1K9 1284 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 ANKRD46Q86W74 232 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 KMT5CQ86Y97 462 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 SVOPLQ8N434 492 aa7.99□□□□□ -1.13
USP54-215ENST00000497106 REEP1Q9H902 201 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms