RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 TMEM35AQ53FP2 167 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 KHDRBS2Q5VWX1 349 aaKnown RBP17.61■□□□□ 0.41
PTCD3-217ENST00000488801 LIPMQ5VYY2 423 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 FAM219BQ5XKK7 198 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 TRIM40Q6P9F5 258 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 TMEM205Q6UW68 189 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 ZNF793Q6ZN11 406 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 SHISA6Q6ZSJ9 500 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 EXOC3L1Q86VI1 746 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 CA13Q8N1Q1 262 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 LSM14AQ8ND56 463 aaKnown RBP17.61■□□□□ 0.41
PTCD3-217ENST00000488801 ARMC2Q8NEN0 867 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 TCP10LQ8TDR4 215 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 TRPC4APQ8TEL6 797 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 AGAP11Q8TF27 550 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 CMTM7Q96FZ5 175 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 BBC3Q96PG8 261 aaPredicted RBP17.61■□□□□ 0.41
PTCD3-217ENST00000488801 FAM111AQ96PZ2 611 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 F2RL3Q96RI0 385 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 SMC6Q96SB8 1091 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 MESP1Q9BRJ9 268 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 CRB3Q9BUF7 120 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 NPLQ9BXD5 320 aaPredicted RBP17.61■□□□□ 0.41
PTCD3-217ENST00000488801 C3orf18Q9UK00 162 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 STK38LQ9Y2H1 464 aa17.61■□□□□ 0.41
PTCD3-217ENST00000488801 LOC102723996A0A087X1L8 192 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 PCDH17O14917 1159 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 CHST10O43529 356 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 SPAG7O75391 227 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 ETHE1O95571 254 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 MLYCDO95822 493 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 ATXN8OSP0DMR3 200 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 OTX2P32243 289 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 TSFMP43897 325 aaKnown RBP17.6■□□□□ 0.41
PTCD3-217ENST00000488801 OLR1P78380 273 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 CASP8Q14790 479 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 RBBP7Q16576 425 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 DEPDC1Q5TB30 811 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 FRG2Q64ET8 278 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 CPZQ66K79 652 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 KIRREL2Q6UWL6 708 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 MILR1Q7Z6M3 343 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 MYLK4Q86YV6 388 aaPredicted RBP17.6■□□□□ 0.41
PTCD3-217ENST00000488801 SRFBP1Q8NEF9 429 aaKnown RBP17.6■□□□□ 0.41
PTCD3-217ENST00000488801 APOBEC4Q8WW27 367 aaKnown RBP17.6■□□□□ 0.41
PTCD3-217ENST00000488801 ATP6V1E2Q96A05 226 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 KCNC2Q96PR1 638 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 FRG2BQ96QU4 278 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 MTERF1Q99551 399 aaKnown RBP17.6■□□□□ 0.41
PTCD3-217ENST00000488801 TRIM55Q9BYV6 548 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 SLC29A3Q9BZD2 475 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 VN1R1Q9GZP7 353 aa17.6■□□□□ 0.41
PTCD3-217ENST00000488801 A0A0G2JN53 185 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 AGPSO00116 658 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 PLPP1O14494 284 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 UBFD1O14562 309 aaKnown RBP17.59■□□□□ 0.41
PTCD3-217ENST00000488801 CEACAM4O75871 244 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 OR4F21O95013 312 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 SEMA3DO95025 777 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 TGFB1P01137 390 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 CERS1P27544 350 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 PKNOX1P55347 436 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 POLE2P56282 527 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 RPS13P62277 151 aaKnown RBP17.59■□□□□ 0.41
PTCD3-217ENST00000488801 RHAGQ02094 409 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 CUL3Q13618 768 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 RUNX2Q13950 521 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 GPRIN3Q6ZVF9 776 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 C10orf107Q8IVU9 208 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 TMEM102Q8N9M5 508 aaPredicted RBP17.59■□□□□ 0.41
PTCD3-217ENST00000488801 OR11G2Q8NGC1 345 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 PPP4R1Q8TF05 950 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 PEX11GQ96HA9 241 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 SERINC2Q96SA4 455 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 TBCDQ9BTW9 1192 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 IQCGQ9H095 443 aaKnown RBP17.59■□□□□ 0.41
PTCD3-217ENST00000488801 ADNPQ9H2P0 1102 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 OR51B5Q9H339 312 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 P4HTMQ9NXG6 502 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 TUBD1Q9UJT1 453 aa17.59■□□□□ 0.41
PTCD3-217ENST00000488801 A0A088AWK7 358 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 ESRRBO95718 433 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 FHP07954 510 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 RNH1P13489 461 aaKnown RBP17.58■□□□□ 0.4
PTCD3-217ENST00000488801 ZNF10P21506 573 aaPredicted RBP17.58■□□□□ 0.4
PTCD3-217ENST00000488801 ATP5A1P25705 553 aaKnown RBP17.58■□□□□ 0.4
PTCD3-217ENST00000488801 CCR10P46092 362 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 PLA2G16P53816 162 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 NAGLUP54802 743 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 MTTPP55157 894 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 BTN3A2P78410 334 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 PHEXP78562 749 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 TGM3Q08188 693 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 DDX39BQ13838 428 aaKnown RBP17.58■□□□□ 0.4
PTCD3-217ENST00000488801 TUBB8Q3ZCM7 444 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 DCAF10Q5QP82 559 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 CHSY3Q70JA7 882 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 PRSS58Q8IYP2 241 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 EXD3Q8N9H8 876 aa17.58■□□□□ 0.4
PTCD3-217ENST00000488801 PLPP5Q8NEB5 264 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms