RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 SYNPO2LQ9H987 977 aa9.78□□□□□ -0.84
SKA1-204ENST00000488454 COPS7BQ9H9Q2 264 aaPredicted RBP9.78□□□□□ -0.84
SKA1-204ENST00000488454 ZNF304Q9HCX3 659 aa9.78□□□□□ -0.84
SKA1-204ENST00000488454 ASCL3Q9NQ33 180 aa9.78□□□□□ -0.84
SKA1-204ENST00000488454 FARSBQ9NSD9 589 aaKnown RBP9.78□□□□□ -0.84
SKA1-204ENST00000488454 IFT80Q9P2H3 777 aaPredicted RBP9.78□□□□□ -0.84
SKA1-204ENST00000488454 VPS29Q9UBQ0 182 aa9.78□□□□□ -0.84
SKA1-204ENST00000488454 GPN3Q9UHW5 284 aaPredicted RBP9.78□□□□□ -0.84
SKA1-204ENST00000488454 ZDHHC2Q9UIJ5 367 aa9.78□□□□□ -0.84
SKA1-204ENST00000488454 SLC12A4Q9UP95 1085 aa9.78□□□□□ -0.84
SKA1-204ENST00000488454 TMEM184BQ9Y519 407 aaPredicted RBP9.78□□□□□ -0.84
SKA1-204ENST00000488454 A0A0A6YYC8 382 aaPredicted RBP9.77□□□□□ -0.85
SKA1-204ENST00000488454 MED19A0JLT2 244 aaPredicted RBP9.77□□□□□ -0.85
SKA1-204ENST00000488454 ARHGAP10A1A4S6 786 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 C9J4A7 227 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 SLCO1B7G3V0H7 640 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 H0YIG0 161 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 I3L1I5 382 aaPredicted RBP9.77□□□□□ -0.85
SKA1-204ENST00000488454 SAP18O00422 153 aaKnown RBP9.77□□□□□ -0.85
SKA1-204ENST00000488454 RGS14O43566 566 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 RAD1O60671 282 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 SNNO75324 88 aaPredicted RBP9.77□□□□□ -0.85
SKA1-204ENST00000488454 KLHL18O94889 574 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 CD63P08962 238 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 FOXA1P55317 472 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 HYAL2Q12891 473 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 CSTF3Q12996 717 aaKnown RBP9.77□□□□□ -0.85
SKA1-204ENST00000488454 ABRAXAS2Q15018 415 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 NKAIN1Q4KMZ8 207 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 DEFB134Q4QY38 66 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 SPDYAQ5MJ70 313 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 TCHHL1Q5QJ38 904 aaPredicted RBP9.77□□□□□ -0.85
SKA1-204ENST00000488454 ARHGAP40Q5TG30 622 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 KANK2Q63ZY3 851 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 OR4C11Q6IEV9 310 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 SCIMPQ6UWF3 145 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 PAGE2Q7Z2X7 111 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 CACNA2D3Q8IZS8 1091 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 DSELQ8IZU8 1212 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 RNF175Q8N4F7 328 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 IL22RA1Q8N6P7 574 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 ZNF781Q8N8C0 355 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 SLC38A9Q8NBW4 561 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 OR9A4Q8NGU2 314 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 TWIST2Q8WVJ9 160 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 C10orf90Q96M02 699 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 QRFPRQ96P65 431 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 TBCDQ9BTW9 1192 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 C20orf27Q9GZN8 174 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 CLK4Q9HAZ1 481 aaKnown RBP9.77□□□□□ -0.85
SKA1-204ENST00000488454 LHX9Q9NQ69 397 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 PPT2Q9UMR5 302 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 NAALAD2Q9Y3Q0 740 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 HRH3Q9Y5N1 445 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 MAU2Q9Y6X3 613 aa9.77□□□□□ -0.85
SKA1-204ENST00000488454 SERTM1A2A2V5 107 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.76□□□□□ -0.85
SKA1-204ENST00000488454 SGK494L7N484 410 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 FOXS1O43638 330 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 B3GALT2O43825 422 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 SEMA3DO95025 777 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 NSA2O95478 260 aaKnown RBP9.76□□□□□ -0.85
SKA1-204ENST00000488454 DLGAP3O95886 979 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 LINC00032P0C843 101 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 SMIM10L1P0DMW3 83 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 KITP10721 976 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 LIPCP11150 499 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 IL1RNP18510 177 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 FBLP22087 321 aaKnown RBP9.76□□□□□ -0.85
SKA1-204ENST00000488454 HNRNPH1P31943 449 aaKnown RBP9.76□□□□□ -0.85
SKA1-204ENST00000488454 ARRB2P32121 409 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 RORAP35398 523 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 SSR2P43308 183 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 TSFMP43897 325 aaKnown RBP9.76□□□□□ -0.85
SKA1-204ENST00000488454 OR1D4P47884 311 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 HK2P52789 917 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 ARFIP1P53367 373 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 MTTPP55157 894 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 PCBP4P57723 403 aaKnown RBP9.76□□□□□ -0.85
SKA1-204ENST00000488454 RPS15P62841 145 aaKnown RBP9.76□□□□□ -0.85
SKA1-204ENST00000488454 BTKQ06187 659 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 COL9A2Q14055 689 aaPredicted RBP9.76□□□□□ -0.85
SKA1-204ENST00000488454 ADPRMQ3LIE5 342 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 MLIPQ5VWP3 458 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 CES4AQ5XG92 561 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 ABHD17CQ6PCB6 329 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 ARHGEF39Q8N4T4 335 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 METTL27Q8N6F8 245 aaPredicted RBP9.76□□□□□ -0.85
SKA1-204ENST00000488454 KIAA1143Q96AT1 154 aaPredicted RBP9.76□□□□□ -0.85
SKA1-204ENST00000488454 SMIM10Q96HG1 83 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 GBP5Q96PP8 586 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 UCN2Q96RP3 112 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 SERINC2Q96SA4 455 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 HBEGFQ99075 208 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 SORT1Q99523 831 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 SPRY4Q9C004 299 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 TNFRSF12AQ9NP84 129 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 RIC8BQ9NVN3 520 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 PNPOQ9NVS9 261 aa9.76□□□□□ -0.85
SKA1-204ENST00000488454 VTI1BQ9UEU0 232 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms