RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SNX7Q9UNH6 387 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 AP3M1Q9Y2T2 418 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 U3KQA8 63 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 OR6C74A6NCV1 312 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 LILRA5A6NI73 299 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 GABRR3A8MPY1 467 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 RHPN2P1A8MT19 583 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 NUDT21O43809 227 aaKnown RBP13.53□□□□□ -0.24
CUX1-209ENST00000487284 LRP3O75074 770 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 STAMBPO95630 424 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 LAMP1P11279 417 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 PIM1P11309 404 aaPredicted RBP13.53□□□□□ -0.24
CUX1-209ENST00000487284 ATP6V1B2P21281 511 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 TGM1P22735 817 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 TPP2P29144 1249 aaPredicted RBP13.53□□□□□ -0.24
CUX1-209ENST00000487284 BSGP35613 385 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 GRK3P35626 688 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 RPL3P39023 403 aaKnown RBP13.53□□□□□ -0.24
CUX1-209ENST00000487284 BCL6P41182 706 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 MTPNP58546 118 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 RHDQ02161 417 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 CYP4F3Q08477 520 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 ZIC1Q15915 447 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 FAM71E1Q6IPT2 247 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 DNAJC14Q6Y2X3 702 aaPredicted RBP13.53□□□□□ -0.24
CUX1-209ENST00000487284 IKBIPQ70UQ0 350 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 SPATA24Q86W54 205 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 ANKRD46Q86W74 232 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 PLD3Q8IV08 490 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 TBC1D19Q8N5T2 526 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 FAM181AQ8N9Y4 354 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 RSC1A1Q92681 617 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 MTERF3Q96E29 417 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 RSRC1Q96IZ7 334 aaKnown RBP13.53□□□□□ -0.24
CUX1-209ENST00000487284 F2RL3Q96RI0 385 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 PRPF18Q99633 342 aaKnown RBP13.53□□□□□ -0.24
CUX1-209ENST00000487284 SH3GL1Q99961 368 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 CPPED1Q9BRF8 314 aaPredicted RBP13.53□□□□□ -0.24
CUX1-209ENST00000487284 DUSP26Q9BV47 211 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.53□□□□□ -0.24
CUX1-209ENST00000487284 TRIM15Q9C019 465 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 REEP4Q9H6H4 257 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 UCK1Q9HA47 277 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 PADI4Q9UM07 663 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 PCDHGB2Q9Y5G2 931 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 SNX13Q9Y5W8 968 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 AP1M2Q9Y6Q5 423 aa13.53□□□□□ -0.24
CUX1-209ENST00000487284 RIF1Q5UIP0 2472 aaKnown RBP13.52□□□□□ -0.25
CUX1-209ENST00000487284 PRSS51A0A1B0GVH4 220 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 AQP12BA6NM10 295 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 HAT1O14929 419 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 ARPC2O15144 300 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 CAPN5O15484 640 aaPredicted RBP13.52□□□□□ -0.25
CUX1-209ENST00000487284 ANP32DO95626 131 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 B3GALT4O96024 378 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 KLK1P06870 262 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 FURINP09958 794 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 GLB1P16278 677 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 TYRP1P17643 537 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 POLR2CP19387 275 aaPredicted RBP13.52□□□□□ -0.25
CUX1-209ENST00000487284 VHLP40337 213 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 SUZ12Q15022 739 aaKnown RBP13.52□□□□□ -0.25
CUX1-209ENST00000487284 GTDC1Q4AE62 458 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 CPTPQ5TA50 214 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 DBX2Q6ZNG2 339 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 PAGE2Q7Z2X7 111 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 ZNF438Q7Z4V0 828 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 R3HCC1LQ7Z5L2 792 aaKnown RBP13.52□□□□□ -0.25
CUX1-209ENST00000487284 PAQR7Q86WK9 346 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 AQP12AQ8IXF9 295 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 TMEM132CQ8N3T6 1108 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 GOLM1Q8NBJ4 401 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 CCDC115Q96NT0 180 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 GBP5Q96PP8 586 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 CENPKQ9BS16 269 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 SORBS1Q9BX66 1292 aaKnown RBP13.52□□□□□ -0.25
CUX1-209ENST00000487284 IKZF5Q9H5V7 419 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 TMEM9BQ9NQ34 198 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 LHX9Q9NQ69 397 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 ADAM29Q9UKF5 820 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 WBP11Q9Y2W2 641 aaKnown RBP13.52□□□□□ -0.25
CUX1-209ENST00000487284 PCDHB3Q9Y5E6 796 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 PCDHB14Q9Y5E9 798 aa13.52□□□□□ -0.25
CUX1-209ENST00000487284 GSAPA4D1B5 854 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 OR5K3A6NET4 321 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 RFXANKO14593 260 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 UBXN7O94888 489 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 FKBP9O95302 570 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 BAG2O95816 211 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 GBAP04062 536 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 UGT2B7P16662 529 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 GRIA3P42263 894 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 CDKN2CP42773 168 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 GRK6P43250 576 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 GSTM5P46439 218 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 OR4D2P58180 307 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 LRRC74AQ0VAA2 488 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 NR0B2Q15466 257 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 ADPRMQ3LIE5 342 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 TMEM35AQ53FP2 167 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms