RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ANAPC2Q9UJX6 822 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 GCN1Q92616 2671 aaKnown RBP13.93□□□□□ -0.18
USP4-212ENST00000486549 A0A088AWK7 358 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 PSMD12O00232 456 aaPredicted RBP13.92□□□□□ -0.18
USP4-212ENST00000486549 B3GALT2O43825 422 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 B4GALT2O60909 372 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 SUPT7LO94864 414 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 FHP07954 510 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 C8orf89P0DMQ9 161 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 MYL2P10916 166 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 RNH1P13489 461 aaKnown RBP13.92□□□□□ -0.18
USP4-212ENST00000486549 ZNF10P21506 573 aaPredicted RBP13.92□□□□□ -0.18
USP4-212ENST00000486549 ITGA3P26006 1051 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 CERS1P27544 350 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 SERPINB1P30740 379 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 CRHR1P34998 444 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 CCT5P48643 541 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 NEK2P51955 445 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 HERVK_113P63132 956 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 PHEXP78562 749 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 KCNC4Q03721 635 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 TGM3Q08188 693 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 TRAF3Q13114 568 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 ZRSR2Q15696 482 aaKnown RBP13.92□□□□□ -0.18
USP4-212ENST00000486549 ADPRMQ3LIE5 342 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 TTC19Q6DKK2 380 aaPredicted RBP13.92□□□□□ -0.18
USP4-212ENST00000486549 ABHD17CQ6PCB6 329 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 LANCL3Q6ZV70 420 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 PTRH1Q86Y79 214 aaKnown RBP13.92□□□□□ -0.18
USP4-212ENST00000486549 PARP9Q8IXQ6 854 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 CA13Q8N1Q1 262 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 GALNT16Q8N428 558 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 L3MBTL4Q8NA19 623 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 FDCSPQ8NFU4 85 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 TRPC4APQ8TEL6 797 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 TBC1D20Q96BZ9 403 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 ZBTB9Q96C00 473 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 REPS1Q96D71 796 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 MTFMTQ96DP5 389 aaKnown RBP13.92□□□□□ -0.18
USP4-212ENST00000486549 CMTM7Q96FZ5 175 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 OR1F2PQ96R84 312 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 ERVK-6Q9BXR3 956 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 ROPN1BQ9BZX4 212 aaPredicted RBP13.92□□□□□ -0.18
USP4-212ENST00000486549 ROPN1Q9HAT0 212 aaPredicted RBP13.92□□□□□ -0.18
USP4-212ENST00000486549 ZNF160Q9HCG1 818 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 ATP13A2Q9NQ11 1180 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 DMRT3Q9NQL9 472 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 LGALS13Q9UHV8 139 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 G3BP2Q9UN86 482 aaKnown RBP13.92□□□□□ -0.18
USP4-212ENST00000486549 PCDHGA11Q9Y5H2 935 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 SPTA1P02549 2419 aa13.92□□□□□ -0.18
USP4-212ENST00000486549 NSG1A0A0A6YYJ2 146 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 IGHV3-20A0A0C4DH32 117 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 H0YIV9 168 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 RTCAO00442 366 aaKnown RBP13.91□□□□□ -0.18
USP4-212ENST00000486549 PPP6CO00743 305 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 OTCP00480 354 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 PROCP04070 461 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 PDGFAP04085 211 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 TUBBP07437 444 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 COX6A1P12074 109 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 JAK1P23458 1154 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 PGDP52209 483 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 RAP1GDS1P52306 607 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 MTTPP55157 894 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 RPS13P62277 151 aaKnown RBP13.91□□□□□ -0.18
USP4-212ENST00000486549 SLC18A2Q05940 514 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 AIMP2Q13155 320 aaKnown RBP13.91□□□□□ -0.18
USP4-212ENST00000486549 RUNX2Q13950 521 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 KRT71Q3SY84 523 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 CCDC153Q494R4 210 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 UNC50Q53HI1 259 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 ZNF678Q5SXM1 525 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 FAM219BQ5XKK7 198 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 CHSY3Q70JA7 882 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 MILR1Q7Z6M3 343 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 TRABD2AQ86V40 505 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 SLC22A9Q8IVM8 553 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 SRRM1Q8IYB3 904 aaKnown RBP13.91□□□□□ -0.18
USP4-212ENST00000486549 OR4F6Q8NGB9 312 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 TSLPQ969D9 159 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 QRFPRQ96P65 431 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 KCNC2Q96PR1 638 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 NTMT1Q9BV86 223 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 NUDT9Q9BW91 350 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 C1QTNF3Q9BXJ4 246 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 IQCGQ9H095 443 aaKnown RBP13.91□□□□□ -0.18
USP4-212ENST00000486549 CLMPQ9H6B4 373 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 LANCL2Q9NS86 450 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 GPR83Q9NYM4 423 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 ADGRE2Q9UHX3 823 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 GRID1Q9ULK0 1009 aa13.91□□□□□ -0.18
USP4-212ENST00000486549 DOCK10Q96BY6 2186 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 IGHV1-45A0A0A0MS14 117 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 A0A1B0GTL3 188 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 MAGEB17A8MXT2 336 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 FAM227AF5H4B4 570 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 G3V2L1 256 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 PLIN3O60664 434 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 CEACAM4O75871 244 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms