RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 LOC105369274A0A096LPK9 316 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 LOC102723532A0A0G2JNH3 316 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 A0A1W2PP18 115 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 C4orf47A7E2U8 309 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 H0YIG0 161 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 B3GALT2O43825 422 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 KIF1CO43896 1103 aaKnown RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 UBOX5O94941 541 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 KLK1P06870 262 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 COX4I1P13073 169 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 HOXB3P14651 431 aaPredicted RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 CSRP1P21291 193 aaKnown RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 IL10P22301 178 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 ATP5A1P25705 553 aaKnown RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 TPP2P29144 1249 aaPredicted RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 TLX1P31314 330 aaPredicted RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 CSTF2P33240 577 aaKnown RBP eCLIP9.66□□□□□ -0.86
USP39-215ENST00000481409 POLR2JP52435 117 aaKnown RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 PLA2G16P53816 162 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 ITGA1P56199 1179 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 VSX2P58304 361 aaPredicted RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 UBAP2LQ14157 1087 aaKnown RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 AGKQ53H12 422 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 STPG1Q5TH74 334 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 MRM1Q6IN84 353 aaKnown RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 FRMPD2BQ6IN97 320 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 ADNP2Q6IQ32 1131 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 PRMT9Q6P2P2 845 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 HACD2Q6Y1H2 254 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 ZNF574Q6ZN55 896 aaPredicted RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 RBM44Q6ZP01 1051 aaKnown RBP9.66□□□□□ -0.86
USP39-215ENST00000481409 MED25Q71SY5 747 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 UBE3DQ7Z6J8 389 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 RIMKLAQ8IXN7 391 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 OR4N4Q8N0Y3 316 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 RNF175Q8N4F7 328 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 ARHGEF39Q8N4T4 335 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 ACOT4Q8N9L9 421 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 AGBL5Q8NDL9 886 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 OR8J2Q8NGG1 315 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 C16orf78Q8WTQ4 265 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 ROPN1LQ96C74 230 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 PPM1MQ96MI6 270 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 STRADBQ9C0K7 418 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 REEP4Q9H6H4 257 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 RMND5AQ9H871 391 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 EFCAB1Q9HAE3 211 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 ANKHQ9HCJ1 492 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 TAS2R7Q9NYW3 318 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 CCDC167Q9P0B6 97 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 ARMCX1Q9P291 453 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 ATP6V1HQ9UI12 483 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 PSME2Q9UL46 239 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 DLGAP4Q9Y2H0 992 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 UNC13CQ8NB66 2214 aa9.66□□□□□ -0.86
USP39-215ENST00000481409 RP1P56715 2156 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 C1orf226A1L170 272 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 HYKKA2RU49 373 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 CCDC154A6NI56 674 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 H3BMH7 237 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 ANGPT2O15123 496 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 SCAMP2O15127 329 aaKnown RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 NRP2O60462 931 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 GALR3O60755 368 aaPredicted RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 OR2B3O76000 313 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 NSA2O95478 260 aaKnown RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 KRT16P08779 473 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 FAM58BPP0C7Q3 252 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 ZNF888P0CJ79 500 aaPredicted RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 MYF5P13349 255 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 DDCP20711 480 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 BUD31P41223 144 aaPredicted RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 AVPR1BP47901 424 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 KLC1Q07866 573 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 SLAMF1Q13291 335 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 BIKQ13323 160 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 EIF3IQ13347 325 aaKnown RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 PDE7AQ13946 482 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 MMEL1Q495T6 779 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 ANXA8L1Q5VT79 327 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 FAM71E1Q6IPT2 247 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 PAOXQ6QHF9 649 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 GPR180Q86V85 440 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 FUNDC1Q8IVP5 155 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 KCT2Q8NC54 265 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 NETO1Q8TDF5 533 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 ZNF501Q96CX3 271 aaPredicted RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 COQ8BQ96D53 544 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 SPDL1Q96EA4 605 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 CCDC74BQ96LY2 380 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 CMKLR1Q99788 373 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 C17orf62Q9BQA9 187 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 ZPBPQ9BS86 351 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 BHLHE41Q9C0J9 482 aaPredicted RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 KLHL25Q9H0H3 589 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 MMADHCQ9H3L0 296 aaPredicted RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 ACTL8Q9H568 366 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 ACTR5Q9H9F9 607 aaPredicted RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 WDR41Q9HAD4 459 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 LHX9Q9NQ69 397 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms