RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 IGLV3-12A0A075B6K2 115 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 H7BY64 318 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 MAP2K7O14733 419 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 NDC80O14777 642 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 SHOXO15266 292 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 SEC31AO94979 1220 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 HPP00738 406 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 AHSGP02765 367 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 ANXA5P08758 320 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 HIST1H2AGP0C0S8 130 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 HIST1H2ADP20671 130 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 GABRB3P28472 473 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 ELK3P41970 407 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 ITGA8P53708 1063 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 CDKN2DP55273 166 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 IL2P60568 153 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 RPS15AP62244 130 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 TBPL1P62380 186 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 TIAL1Q01085 375 aaKnown RBP eCLIP6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 KLC1Q07866 573 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 FRG1Q14331 258 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 INPP5JQ15735 1006 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 NDUFA9Q16795 377 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 HKDC1Q2TB90 917 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 RBM20Q5T481 1227 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 TEDDM1Q5T9Z0 273 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 HECTD2Q5U5R9 776 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 AGAP7PQ5VUJ5 663 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 IRAK1BP1Q5VVH5 260 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 STEAP4Q687X5 459 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 FAM45BPQ6NSW5 357 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 KIRREL2Q6UWL6 708 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 IGFL3Q6UXB1 125 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 RELL1Q8IUW5 271 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 ZADH2Q8N4Q0 377 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 FAM26EQ8N5C1 309 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 FAM45AQ8TCE6 357 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 STT3BQ8TCJ2 826 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 MMABQ96EY8 250 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 LINGO1Q96FE5 620 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 CFAP36Q96G28 342 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 SNF8Q96H20 258 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 PDLIM2Q96JY6 352 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 HIST1H2AHQ96KK5 128 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 PRAP1Q96NZ9 151 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 AGAP4Q96P64 663 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 HIST1H2AJQ99878 128 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 TRIM51Q9BSJ1 452 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 H2AFJQ9BTM1 129 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 CRB3Q9BUF7 120 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 TRIM54Q9BYV2 358 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 SLC29A3Q9BZD2 475 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 DRC3Q9H069 523 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 ILKAPQ9H0C8 392 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 TMEM184CQ9NVA4 438 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 C14orf105Q9NVL8 296 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 LUZP4Q9P127 313 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 TRPC4Q9UBN4 977 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 C3orf18Q9UK00 162 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 CHMP2BQ9UQN3 213 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 PDE10AQ9Y233 779 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 TEX264Q9Y6I9 313 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 SETXQ7Z333 2677 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 CPAMD8Q8IZJ3 1885 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 PRRC2CQ9Y520 2896 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 KCNE1BA0A087WTH5 132 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 A0A0A6YYC8 382 aaPredicted RBP6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 CLEC18AA5D8T8 446 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 EFCAB8A8MWE9 144 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 I3L1I5 382 aaPredicted RBP6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 MASP2O00187 686 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 PCDH17O14917 1159 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 P2RX6O15547 441 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 TTI1O43156 1089 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 ALOX12BO75342 701 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 GSNP06396 782 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 FDXRP22570 491 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 GNLYP22749 145 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 GRK3P35626 688 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 SLC26A3P40879 764 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 AVPR1BP47901 424 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 EMP2P54851 167 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 AP1S2P56377 157 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 FAM53BQ14153 422 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 PHKG1Q16816 387 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 VWA2Q5GFL6 755 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 BICRALQ6AI39 1079 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 CAPN13Q6MZZ7 669 aaPredicted RBP6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 TRMT10BQ6PF06 316 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 CRIP3Q6Q6R5 217 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 AGTRAPQ6RW13 159 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 LCTLQ6UWM7 567 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 CLEC18BQ6UXF7 455 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 MBOAT1Q6ZNC8 495 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 SLC26A11Q86WA9 606 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 C17orf64Q86WR6 236 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 PRSS58Q8IYP2 241 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 IQCKQ8N0W5 287 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 ARHGEF39Q8N4T4 335 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 AMER3Q8N944 861 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms