RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 EGFL8Q99944 293 aa12.72□□□□□ -0.37
HMGN1-211ENST00000471260 PITHD1Q9GZP4 211 aaPredicted RBP12.72□□□□□ -0.37
HMGN1-211ENST00000471260 SAYSD1Q9NPB0 183 aa12.72□□□□□ -0.37
HMGN1-211ENST00000471260 NKIRAS1Q9NYS0 192 aa12.72□□□□□ -0.37
HMGN1-211ENST00000471260 STMN3Q9NZ72 180 aa12.72□□□□□ -0.37
HMGN1-211ENST00000471260 IKZF3Q9UKT9 509 aa12.72□□□□□ -0.37
HMGN1-211ENST00000471260 SCN3AQ9NY46 2000 aa12.72□□□□□ -0.37
HMGN1-211ENST00000471260 SPTBN1Q01082 2364 aaKnown RBP12.72□□□□□ -0.37
HMGN1-211ENST00000471260 ICE1Q9Y2F5 2266 aa12.72□□□□□ -0.37
HMGN1-211ENST00000471260 SCN2AQ99250 2005 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 TMEM120BA0PK00 339 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 NPEPPSL1A6NEC2 478 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 CYSRT1A8MQ03 144 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 ANKRD65E5RJM6 399 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 SNX3O60493 162 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 H2AFYO75367 372 aaKnown RBP12.71□□□□□ -0.37
HMGN1-211ENST00000471260 WISP3O95389 354 aaPredicted RBP12.71□□□□□ -0.37
HMGN1-211ENST00000471260 ACSL3O95573 720 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 FHP07954 510 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 SERPINA6P08185 405 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 SSTR1P30872 391 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 HNRNPH1P31943 449 aaKnown RBP12.71□□□□□ -0.37
HMGN1-211ENST00000471260 GP5P40197 560 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 SLC6A12P48065 614 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 RHAGQ02094 409 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 ABRAXAS2Q15018 415 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 TSNQ15631 228 aaKnown RBP12.71□□□□□ -0.37
HMGN1-211ENST00000471260 BTBD16Q32M84 506 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 DEFB134Q4QY38 66 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 RGS9BPQ6ZS82 235 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 C3orf62Q6ZUJ4 267 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 LANCL3Q6ZV70 420 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 TMPRSS11BQ86T26 416 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 UTP15Q8TED0 518 aaKnown RBP12.71□□□□□ -0.37
HMGN1-211ENST00000471260 ANKRD49Q8WVL7 239 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 CKAP2Q8WWK9 683 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 RHBDF1Q96CC6 855 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 MOCOSQ96EN8 888 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 PEX11GQ96HA9 241 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 MAGEB18Q96M61 343 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 C5orf34Q96MH7 638 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 TSNARE1Q96NA8 513 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 LPAR4Q99677 370 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 GPR22Q99680 433 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 SLX1AQ9BQ83 275 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 SLC6A16Q9GZN6 736 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.71□□□□□ -0.37
HMGN1-211ENST00000471260 MMP25Q9NPA2 562 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 LANCL2Q9NS86 450 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 GPRC5BQ9NZH0 403 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 ABI3Q9P2A4 366 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 COPG2Q9UBF2 871 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 PLEKHB1Q9UF11 243 aaPredicted RBP12.71□□□□□ -0.37
HMGN1-211ENST00000471260 ERRFI1Q9UJM3 462 aaPredicted RBP12.71□□□□□ -0.37
HMGN1-211ENST00000471260 PCDHGB6Q9Y5F9 930 aa12.71□□□□□ -0.37
HMGN1-211ENST00000471260 NBPF19A0A087WUL8 3843 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 TCRBV9S1A1TA0A576 114 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 OR5H15A6NDH6 313 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 FAM159BA6NKW6 160 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 SEC24DO94855 1032 aaPredicted RBP12.7□□□□□ -0.38
HMGN1-211ENST00000471260 WDPCPO95876 746 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 LDLRP01130 860 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 SERPIND1P05546 499 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 CELA2AP08217 269 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 SMIM10L1P0DMW3 83 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 C1GALT1C1LP0DN25 315 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 STMN1P16949 149 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 GGT5P36269 586 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 ATP6V0D1P61421 351 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 STXBP1P61764 594 aaKnown RBP12.7□□□□□ -0.38
HMGN1-211ENST00000471260 ZNF33BQ06732 778 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 ZNF460Q14592 562 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 USP10Q14694 798 aaKnown RBP12.7□□□□□ -0.38
HMGN1-211ENST00000471260 RBBP5Q15291 538 aaKnown RBP12.7□□□□□ -0.38
HMGN1-211ENST00000471260 TGFBIQ15582 683 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 MEP1AQ16819 746 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 SPDYAQ5MJ70 313 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 ZNF324BQ6AW86 544 aaPredicted RBP12.7□□□□□ -0.38
HMGN1-211ENST00000471260 QSOX2Q6ZRP7 698 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 CAPN12Q6ZSI9 719 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 TRPM8Q7Z2W7 1104 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 LRRC34Q8IZ02 419 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 ANKRD53Q8N9V6 530 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 DNAJB8Q8NHS0 232 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 SMIM10Q96HG1 83 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 RBBP8Q99708 897 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 EHD1Q9H4M9 534 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 NT5DC2Q9H857 520 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 SMYD2Q9NRG4 433 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 OLAHQ9NV23 265 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 PLA2G3Q9NZ20 509 aa12.7□□□□□ -0.38
HMGN1-211ENST00000471260 MTO1Q9Y2Z2 717 aaKnown RBP12.7□□□□□ -0.38
HMGN1-211ENST00000471260 SPTAN1Q13813 2472 aaKnown RBP12.7□□□□□ -0.38
HMGN1-211ENST00000471260 IGHV3-20A0A0C4DH32 117 aa12.69□□□□□ -0.38
HMGN1-211ENST00000471260 SMIM23A6NLE4 172 aa12.69□□□□□ -0.38
HMGN1-211ENST00000471260 E2F3O00716 465 aa12.69□□□□□ -0.38
HMGN1-211ENST00000471260 CHST10O43529 356 aa12.69□□□□□ -0.38
HMGN1-211ENST00000471260 PRAMEF2O60811 474 aa12.69□□□□□ -0.38
HMGN1-211ENST00000471260 WDR47O94967 919 aa12.69□□□□□ -0.38
HMGN1-211ENST00000471260 CRYABP02511 175 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms