RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PTRH2Q9Y3E5 179 aaKnown RBP11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 TNPO3Q9Y5L0 923 aaKnown RBP11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 CSAG2Q9Y5P2 127 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 KCNE1BA0A087WTH5 132 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 FEZF1A0PJY2 475 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 FITM1A5D6W6 292 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 A8MT66 165 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 PEX12O00623 359 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 RGS16O15492 202 aaPredicted RBP11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 C1GALT1C1LP0DN25 315 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 EPB42P16452 691 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 TAC1P20366 129 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 EEF1DP29692 281 aaKnown RBP11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 OTX2P32243 289 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 BCL6P41182 706 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 PIK3CGP48736 1102 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 ART1P52961 327 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 MEF2AQ02078 507 aaPredicted RBP11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 PRTGQ2VWP7 1150 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 CCDC153Q494R4 210 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 WASHC2DQ5SRD0 308 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 ATG9BQ674R7 924 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 B3GNTL1Q67FW5 361 aaPredicted RBP11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 MTFR2Q6P444 385 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 RPTNQ6XPR3 784 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 SLCO4C1Q6ZQN7 724 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 MRGPREQ86SM8 312 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 TBC1D19Q8N5T2 526 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 TTC29Q8NA56 475 aaPredicted RBP11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 MFSD9Q8NBP5 474 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 PHF21BQ96EK2 531 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 WDR34Q96EX3 536 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 APOPT1Q96IL0 206 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 AIF1LQ9BQI0 150 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 SLC26A1Q9H2B4 701 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 SPNS1Q9H2V7 528 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 EHD1Q9H4M9 534 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 WDR54Q9H977 334 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 MCCC2Q9HCC0 563 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 SLC22A11Q9NSA0 550 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 CUTCQ9NTM9 273 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 ARGLU1Q9NWB6 273 aaPredicted RBP11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 SENP1Q9P0U3 644 aa11.27□□□□□ -0.61
SQSTM1-206ENST00000466342 LRRC14BA6NHZ5 514 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 CCL21O00585 134 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 TXNDC9O14530 226 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 OR1F1O43749 312 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 LCMT2O60294 686 aaKnown RBP11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 DLX3O60479 287 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 PLIN3O60664 434 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 PRAMEF4O60810 478 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 CNOT3O75175 753 aaKnown RBP11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 H2AFYO75367 372 aaKnown RBP11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 SIX3O95343 332 aaPredicted RBP11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 PROCP04070 461 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 EIF2S1P05198 315 aaKnown RBP11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 RPS17P08708 135 aaKnown RBP11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 H2AFXP16104 143 aaPredicted RBP11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 ATP5F1P24539 256 aaPredicted RBP11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 CXCR2P25025 360 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 AHRP35869 848 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 EMP3P54852 163 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 TLE4Q04727 773 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 PCDH1Q08174 1060 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 GTF2H2Q13888 395 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 E2F2Q14209 437 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 CASP8Q14790 479 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 ZNF169Q14929 603 aaPredicted RBP11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 SLC9A5Q14940 896 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 PRAMEF9Q5VWM5 478 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 GTF2H2CQ6P1K8 395 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 FAM180AQ6UWF9 173 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 GOLGA7Q7Z5G4 137 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 VN1R4Q7Z5H5 301 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 SLC22A9Q8IVM8 553 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 TEX9Q8N6V9 391 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 CSNK1A1LQ8N752 337 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 BANPQ8N9N5 519 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 ZNF740Q8NDX6 193 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 CHTF18Q8WVB6 975 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 PTCD3Q96EY7 689 aaKnown RBP11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 SMC6Q96SB8 1091 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 C1QTNF3Q9BXJ4 246 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 NT5DC2Q9H857 520 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 ATP13A2Q9NQ11 1180 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 OLAHQ9NV23 265 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 ANGPTL3Q9Y5C1 460 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 SCN3AQ9NY46 2000 aa11.26□□□□□ -0.61
SQSTM1-206ENST00000466342 HYKKA2RU49 373 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 P2RX6O15547 441 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 UMODP07911 640 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 SLC35G6P0C7Q6 338 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 ITGAXP20702 1163 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 MMP11P24347 488 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 CASP2P42575 452 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 SCTRP47872 440 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 KCNK10P57789 538 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 HERVK_113P63132 956 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 IRF8Q02556 426 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 CHIT1Q13231 466 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms