RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	RNASEH2B	Q5TBB1	312 aa	Known RBP	10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	NIPAL1	Q6NVV3	410 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	ABHD13	Q7L211	337 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	GALNT7	Q86SF2	657 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	IGDCC3	Q8IVU1	814 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	MYO1H	Q8N1T3	1032 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	B3GNT7	Q8NFL0	401 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	SLC5A11	Q8WWX8	675 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	ALKBH8	Q96BT7	664 aa	Known RBP	10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	POM121	Q96HA1	1249 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	WDR83	Q9BRX9	315 aa	Known RBP	10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	UCK2	Q9BZX2	261 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	ZDHHC11	Q9H8X9	412 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	LZTFL1	Q9NQ48	299 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	TAS2R13	Q9NYV9	303 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	SPG11	Q96JI7	2443 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815		A0A0G2JMM0	328 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	TRBV11-1	A0A0K0K1C0	115 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815		A0A1W2PPB8	328 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815		A0A1W2PRS3	328 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	KIR3DP1	A8MWS1	328 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	TFEC	O14948	347 aa	Predicted RBP	10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	ITGA10	O75578	1167 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	GLS	O94925	669 aa	Predicted RBP	10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	RNH1	P13489	461 aa	Known RBP	10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	PGAM1	P18669	254 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	CHRNB4	P30926	498 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	GPR85	P60893	370 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	C16orf47	Q6ZP98	133 aa	Predicted RBP	10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	CEP128	Q6ZU80	1094 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	CYP4X1	Q8N118	509 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	EID3	Q8N140	333 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	CYP4Z2P	Q8N1L4	340 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	TRIM58	Q8NG06	486 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	PDLIM5	Q96HC4	596 aa	Known RBP	10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	MS4A14	Q96JA4	679 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	TSNARE1	Q96NA8	513 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	DEFB126	Q9BYW3	111 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	PELI2	Q9HAT8	420 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	ARL15	Q9NXU5	204 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	COQ3	Q9NZJ6	369 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	MAD1L1	Q9Y6D9	718 aa		10.39	□□□□□ -0.75
PTPN7-204	ENST00000462815	PHF3	Q92576	2039 aa	Known RBP	10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	INTS1	Q8N201	2190 aa	Known RBP	10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815		A8MUA0	341 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	KLRC4-KLRK1	H3BQV0	150 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	FCHO1	O14526	889 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	FANCG	O15287	622 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	NRDC	O43847	1150 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	ZNF354A	O60765	605 aa	Predicted RBP	10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	MYO1D	O94832	1006 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	SERPINA6	P08185	405 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	HOXD4	P09016	255 aa	Predicted RBP	10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	ENO2	P09104	434 aa	Predicted RBP	10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	HNRNPH1	P31943	449 aa	Known RBP	10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	HNF4A	P41235	474 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	CLCN2	P51788	898 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	NUP107	P57740	925 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	SKP1	P63208	163 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	RGS1	Q08116	209 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	RUNX2	Q13950	521 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	XKR6	Q5GH73	641 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	TEDDM1	Q5T9Z0	273 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	HECTD2	Q5U5R9	776 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	RTL6	Q6ICC9	239 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	ARHGAP11A	Q6P4F7	1023 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	CCDC137	Q6PK04	289 aa	Known RBP	10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	NXPE4	Q6UWF7	544 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	VN1R5	Q7Z5H4	357 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	CCDC71	Q8IV32	467 aa	Predicted RBP	10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	KLHDC8A	Q8IYD2	350 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	ASB5	Q8WWX0	329 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	NRGN	Q92686	78 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	NCLN	Q969V3	563 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	MAGOHB	Q96A72	148 aa	Known RBP	10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	TMEM125	Q96AQ2	219 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	SEC16B	Q96JE7	1060 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	QRFPR	Q96P65	431 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	TMUB1	Q9BVT8	246 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	CXXC4	Q9H2H0	198 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	TP63	Q9H3D4	680 aa	Predicted RBP	10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	MMACHC	Q9Y4U1	282 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	FAM215A	Q9Y5M1	114 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	LIPG	Q9Y5X9	500 aa		10.38	□□□□□ -0.75
PTPN7-204	ENST00000462815	FAM90A27P	A6NNH2	459 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	CDC40	O60508	579 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	PRAMEF4	O60810	478 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	GUCA1C	O95843	209 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	IGHG3	P01860	377 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	SERPIND1	P05546	499 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	HIST1H2AD	P20671	130 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	DNAJA1	P31689	397 aa	Known RBP	10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	SLC6A12	P48065	614 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	DLX5	P56178	289 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	IL2	P60568	153 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	CSHL1	Q14406	222 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	ADPRM	Q3LIE5	342 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	TOR1AIP1	Q5JTV8	583 aa		10.37	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms