RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SIKE1Q9BRV8 207 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 ZNF717Q9BY31 904 aaPredicted RBP10.98□□□□□ -0.65
SCN9A-204ENST00000452182 DDX31Q9H8H2 851 aaKnown RBP10.98□□□□□ -0.65
SCN9A-204ENST00000452182 MEAF6Q9HAF1 191 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 PRM3Q9NNZ6 103 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 LHX9Q9NQ69 397 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 THSD1Q9NS62 852 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 RIC8BQ9NVN3 520 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 DHCR7Q9UBM7 475 aaKnown RBP10.98□□□□□ -0.65
SCN9A-204ENST00000452182 MARCOQ9UEW3 520 aaPredicted RBP10.98□□□□□ -0.65
SCN9A-204ENST00000452182 ADAM29Q9UKF5 820 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 FER1L5A0AVI2 2057 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 STMND1H3BQB6 276 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 BRINP1O60477 761 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 VPS4BO75351 444 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 SKAP2O75563 359 aaPredicted RBP10.98□□□□□ -0.65
SCN9A-204ENST00000452182 KLHL18O94889 574 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 KLK3P07288 261 aaPredicted RBP10.98□□□□□ -0.65
SCN9A-204ENST00000452182 IL1RNP18510 177 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 SPINK2P20155 84 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 HIST1H1TP22492 207 aaPredicted RBP10.98□□□□□ -0.65
SCN9A-204ENST00000452182 ALAS2P22557 587 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 BSGP35613 385 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 RAP1GDS1P52306 607 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 PLA2G16P53816 162 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 MTTPP55157 894 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 RAB8AP61006 207 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 PDCD2Q16342 344 aaPredicted RBP10.98□□□□□ -0.65
SCN9A-204ENST00000452182 SMU1Q2TAY7 513 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 AP5B1Q2VPB7 878 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 DEFB134Q4QY38 66 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 OR4C11Q6IEV9 310 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 SCIMPQ6UWF3 145 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 PAGE2Q7Z2X7 111 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 NUDT13Q86X67 352 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 PDSS2Q86YH6 399 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 OR2T11Q8NH01 316 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 PPP3R2Q96LZ3 170 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 C3orf30Q96M34 536 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 SERINC2Q96SA4 455 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 NPLQ9BXD5 320 aaPredicted RBP10.98□□□□□ -0.65
SCN9A-204ENST00000452182 MRPL1Q9BYD6 325 aaKnown RBP10.98□□□□□ -0.65
SCN9A-204ENST00000452182 NUF2Q9BZD4 464 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 ZNF304Q9HCX3 659 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 NAALAD2Q9Y3Q0 740 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 PTGDR2Q9Y5Y4 395 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 AK5Q9Y6K8 562 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 USH1CQ9Y6N9 552 aa10.98□□□□□ -0.65
SCN9A-204ENST00000452182 CACNA1AO00555 2505 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 SDK2Q58EX2 2172 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 A0A0A6YYC8 382 aaPredicted RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 I3L1I5 382 aaPredicted RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 SAP18O00422 153 aaKnown RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 LSM1O15116 133 aaKnown RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 POLR3GO15318 223 aaPredicted RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 SH3BGRLO75368 114 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 PRR35P0CG20 571 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 KITP10721 976 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 PIM1P11309 404 aaPredicted RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 ACPPP15309 386 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 ITGAXP20702 1163 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 AGXTP21549 392 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 ATP5A1P25705 553 aaKnown RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 LSP1P33241 339 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 SSR2P43308 183 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 GYS2P54840 703 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 BTN3A2P78410 334 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 DCDP81605 110 aaKnown RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 ACSM2AQ08AH3 577 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 KIAA0040Q15053 153 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 SPDYAQ5MJ70 313 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 ACSM2BQ68CK6 577 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 C6orf15Q6UXA7 325 aaPredicted RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 ZNF793Q6ZN11 406 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 PRSS41Q7RTY9 318 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 COMMD6Q7Z4G1 85 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 DTX1Q86Y01 620 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 ESX1Q8N693 406 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 AMER3Q8N944 861 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 ACOT4Q8N9L9 421 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 OR9A4Q8NGU2 314 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 STON2Q8WXE9 905 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 MMABQ96EY8 250 aaPredicted RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 APIPQ96GX9 242 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 MAELQ96JY0 434 aaKnown RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 COPS7BQ9H9Q2 264 aaPredicted RBP10.97□□□□□ -0.65
SCN9A-204ENST00000452182 LRTM1Q9HBL6 345 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 C1orf109Q9NX04 203 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 DKK4Q9UBT3 224 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 NDOR1Q9UHB4 597 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 TMED5Q9Y3A6 229 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 MAP4K5Q9Y4K4 846 aa10.97□□□□□ -0.65
SCN9A-204ENST00000452182 SCN3AQ9NY46 2000 aa10.96□□□□□ -0.65
SCN9A-204ENST00000452182 IGLV3-12A0A075B6K2 115 aa10.96□□□□□ -0.65
SCN9A-204ENST00000452182 A0A0A6YYD5 115 aa10.96□□□□□ -0.65
SCN9A-204ENST00000452182 RTCAO00442 366 aaKnown RBP10.96□□□□□ -0.65
SCN9A-204ENST00000452182 B3GALT2O43825 422 aa10.96□□□□□ -0.65
SCN9A-204ENST00000452182 ALBP02768 609 aa10.96□□□□□ -0.65
SCN9A-204ENST00000452182 VIMP08670 466 aaKnown RBP10.96□□□□□ -0.65
SCN9A-204ENST00000452182 CCNYL3P0C7X3 344 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms