RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 VIPR1P32241 457 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 BDKRB1P46663 353 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 LIMK1P53667 647 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 CCSMST1Q4G0I0 132 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 COLEC12Q5KU26 742 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 COX20Q5RI15 118 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 PPP2R2DQ66LE6 453 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 GDPD4Q6W3E5 623 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 ZNF852Q6ZMS4 543 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 LGI4Q8N135 537 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 DENND6BQ8NEG7 585 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 HUS1BQ8NHY5 278 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 ZNF675Q8TD23 568 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 COL21A1Q96P44 957 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 THSD1Q9NS62 852 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 RAPGEFL1Q9UHV5 662 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 ITGB1BP2Q9UKP3 347 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 FAM32AQ9Y421 112 aaKnown RBP15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 PCDHGA3Q9Y5H0 932 aa15.73■□□□□ 0.11
CLCNKA-203ENST00000439316 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 DSCR3O14972 297 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 SH3BGRLO75368 114 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 CYP2A6P11509 494 aaPredicted RBP15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 ETFAP13804 333 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 SERPINB1P30740 379 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 GRK5P34947 590 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 CRATP43155 626 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 POLR2LP62875 67 aaKnown RBP15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 SPIBQ01892 262 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 FCHO2Q0JRZ9 810 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 IRF3Q14653 427 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 MICAQ29983 383 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 EXOC3L2Q2M3D2 409 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 SYTL3Q4VX76 610 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 GCNT6Q5T4J0 391 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 ZNF648Q5T619 568 aaPredicted RBP15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 ASTLQ6HA08 431 aaPredicted RBP15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 Q6ZVU0 165 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 DEPDC4Q8N2C3 294 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 AMER2Q8N7J2 671 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 GPR156Q8NFN8 814 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 KBTBD8Q8NFY9 601 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 OR52N2Q8NGI0 321 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 FOXJ1Q92949 421 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 ZNF707Q96C28 371 aaPredicted RBP15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 TMEM165Q9HC07 324 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 AMBNQ9NP70 447 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 ABCB10Q9NRK6 738 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 SACM1LQ9NTJ5 587 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 SH3BP4Q9P0V3 963 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 FAM8A1Q9UBU6 413 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 ZNF229Q9UJW7 825 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 XIRP2A4UGR9 3374 aa15.72■□□□□ 0.11
CLCNKA-203ENST00000439316 GNG14A0A1W2PPG7 69 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 PRAMEF25A6NGN4 478 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 FADS2P1A8MWK0 482 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 WASH3PC4AMC7 463 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 QSOX1O00391 747 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 NPC1O15118 1278 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 TSPAN6O43657 245 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 CATP04040 527 aaKnown RBP15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 STSP08842 583 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 ZNF8P17098 575 aaPredicted RBP15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 FUT4P22083 530 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 NUDT6P53370 316 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 PNLIPRP1P54315 467 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 CDH12P55289 794 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 RPS13P62277 151 aaKnown RBP15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 RBBP4Q09028 425 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 ARHGAP15Q53QZ3 475 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 BRAT1Q6PJG6 821 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 CCDC80Q76M96 950 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 NLRP8Q86W28 1048 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 TRAM1L1Q8N609 369 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 C12orf76Q8N812 135 aaPredicted RBP15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 TIFAQ96CG3 184 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 PKP4Q99569 1192 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 GDF15Q99988 308 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 NIPSNAP1Q9BPW8 284 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 CDADC1Q9BWV3 514 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 REEP4Q9H6H4 257 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 GPR83Q9NYM4 423 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 NFKBIL1Q9UBC1 381 aaPredicted RBP15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 DPP7Q9UHL4 492 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 MSRAQ9UJ68 235 aa15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 GPC6Q9Y625 555 aaPredicted RBP15.71■□□□□ 0.11
CLCNKA-203ENST00000439316 EPOPA6NHQ4 379 aa15.71■□□□□ 0.1
CLCNKA-203ENST00000439316 TNRC18O15417 2968 aaPredicted RBP15.71■□□□□ 0.1
CLCNKA-203ENST00000439316 SLC16A8O95907 504 aa15.71■□□□□ 0.1
CLCNKA-203ENST00000439316 PTHP01270 115 aa15.71■□□□□ 0.1
CLCNKA-203ENST00000439316 DBTP11182 482 aaKnown RBP15.71■□□□□ 0.1
CLCNKA-203ENST00000439316 DDX6P26196 483 aaKnown RBP eCLIP15.71■□□□□ 0.1
CLCNKA-203ENST00000439316 PREPP48147 710 aa15.71■□□□□ 0.1
CLCNKA-203ENST00000439316 IDH2P48735 452 aaKnown RBP15.71■□□□□ 0.1
CLCNKA-203ENST00000439316 HBA1P69905 142 aa15.71■□□□□ 0.1
CLCNKA-203ENST00000439316 EEF1A2Q05639 463 aaKnown RBP15.71■□□□□ 0.1
CLCNKA-203ENST00000439316 SLC13A2Q13183 592 aa15.71■□□□□ 0.1
CLCNKA-203ENST00000439316 SCARB2Q14108 478 aa15.71■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms