RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 OR13H1Q8NG92 308 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 BIRC7Q96CA5 298 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 PELOQ9BRX2 385 aaKnown RBP8.02□□□□□ -1.13
USP54-203ENST00000418501 SLC6A17Q9H1V8 727 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 UCK1Q9HA47 277 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 OLAHQ9NV23 265 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 PACSIN3Q9UKS6 424 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 HCN2Q9UL51 889 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 ST14Q9Y5Y6 855 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 CCDC163A0A0D9SF12 145 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 TLR4O00206 839 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 CLDN4O14493 209 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 ANKRD28O15084 1053 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 TNFAIP8O95379 198 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 IL3P08700 152 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 RRM2P31350 389 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 PLA2G16P53816 162 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 LRRC36Q1X8D7 754 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 OR52E8Q6IFG1 317 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 FAM71E1Q6IPT2 247 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 C8orf82Q6P1X6 216 aaPredicted RBP8.02□□□□□ -1.13
USP54-203ENST00000418501 TAGAPQ8N103 731 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 DHRSXQ8N5I4 330 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 DEFB123Q8N688 67 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 FAM47BQ8NA70 645 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 RSC1A1Q92681 617 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 NRBF2Q96F24 287 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 BMFQ96LC9 184 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 CPPED1Q9BRF8 314 aaPredicted RBP8.02□□□□□ -1.13
USP54-203ENST00000418501 EVA1AQ9H8M9 152 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 C3orf18Q9UK00 162 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 TMCC3Q9ULS5 477 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 COLQQ9Y215 455 aaPredicted RBP8.02□□□□□ -1.13
USP54-203ENST00000418501 A0A1B0GTL3 188 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 OR52A4PA6NMU1 304 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 B4DGG1 531 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 ADAMDEC1O15204 470 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 LAMTOR5O43504 91 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 NARSO43776 548 aaKnown RBP8.02□□□□□ -1.13
USP54-203ENST00000418501 SRPX2O60687 465 aaPredicted RBP8.02□□□□□ -1.13
USP54-203ENST00000418501 CST1P01037 141 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 FABP3P05413 133 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 NR2F6P10588 404 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 GALNT4Q8N4A0 578 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 PDXPQ96GD0 296 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 PYURFQ96I23 114 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 SLC35G5Q96KT7 338 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 PHF12Q96QT6 1004 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 DPYSL5Q9BPU6 564 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 RBM4BQ9BQ04 359 aaKnown RBP8.02□□□□□ -1.13
USP54-203ENST00000418501 SLC39A3Q9BRY0 314 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 DUSP23Q9BVJ7 150 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 RBM4Q9BWF3 364 aaKnown RBP8.02□□□□□ -1.13
USP54-203ENST00000418501 CHID1Q9BWS9 393 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 TMEM168Q9H0V1 697 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 ING2Q9H160 280 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 CAAP1Q9H8G2 361 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 ICKQ9UPZ9 632 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 PCDHB14Q9Y5E9 798 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 NOTCH4Q99466 2003 aa8.02□□□□□ -1.13
USP54-203ENST00000418501 HPRP00739 348 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 POLR2CP19387 275 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 ATP6V1B2P21281 511 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 RGS19P49795 217 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 DSTNP60981 165 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 TOP3AQ13472 1001 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 CLCA4Q14CN2 919 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 DLEU7Q6UYE1 221 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 CEP68Q76N32 757 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 ANKRD46Q86W74 232 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 LRRC56Q8IYG6 542 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 OR7A2PQ8NGA2 310 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 FBXO30Q8TB52 745 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 CANT1Q8WVQ1 401 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 F2RL3Q96RI0 385 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 NPLQ9BXD5 320 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 PIF1Q9H611 641 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 DDX31Q9H8H2 851 aaKnown RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 TM7SF3Q9NS93 570 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 SOHLH2Q9NX45 425 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 TRPC4Q9UBN4 977 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 TBC1D29Q9UFV1 150 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 GBF1Q92538 1859 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 MYOFQ9NZM1 2061 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 TTC36A6NLP5 189 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 GABRR3A8MPY1 467 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 FURINP09958 794 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 IL12AP29459 219 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 PCGF2P35227 344 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 ERFP50548 548 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 MEF2AQ02078 507 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 ZNHIT3Q15649 155 aaPredicted RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 DUS1LQ6P1R4 473 aaKnown RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 ZC3H7AQ8IWR0 971 aaKnown RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 OR5K1Q8NHB7 308 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 NT5CQ8TCD5 201 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 EXOSC8Q96B26 276 aaKnown RBP8.01□□□□□ -1.13
USP54-203ENST00000418501 SARGQ9BW04 601 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 SLC7A5P2Q9GIP4 190 aa8.01□□□□□ -1.13
USP54-203ENST00000418501 PAIP1Q9H074 479 aaKnown RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms