RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 PHC1P78364 1004 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ELF3P78545 371 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 DAB2P98082 770 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 HYAL2Q12891 473 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 SLAMF1Q13291 335 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 KCNAB1Q14722 419 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 SLC9A5Q14940 896 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 NR0B2Q15466 257 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 TRMT5Q32P41 509 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 TMEM35AQ53FP2 167 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 RABL3Q5HYI8 236 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 PEAR1Q5VY43 1037 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 ABHD17CQ6PCB6 329 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 DHDDSQ86SQ9 333 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 IFNEQ86WN2 208 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 TICAM1Q8IUC6 712 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 RIMKLAQ8IXN7 391 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 CSNK1A1LQ8N752 337 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ACOT4Q8N9L9 421 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 CAMKVQ8NCB2 501 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 FAM13CQ8NE31 585 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 TSPEARQ8WU66 669 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ROPN1LQ96C74 230 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 PPCDCQ96CD2 204 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 RNF31Q96EP0 1072 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 FCRL1Q96LA6 429 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 TMEM74Q96NL1 305 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 QRFPRQ96P65 431 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 NUDT22Q9BRQ3 303 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 SARGQ9BW04 601 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 UCK1Q9HA47 277 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 LHX9Q9NQ69 397 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 C1GALT1Q9NS00 363 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 TEX10Q9NXF1 929 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 ATXN7L1Q9ULK2 861 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 L3MBTL1Q9Y468 752 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 DYTNA2CJ06 578 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 WASHC1A8K0Z3 465 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 RFXANKO14593 260 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 GALR2O43603 387 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 ENTPD5O75356 428 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 PRKRAO75569 313 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 KLHL18O94889 574 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 KCNH1O95259 989 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ACPPP15309 386 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 IL1RNP18510 177 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 HIST1H1TP22492 207 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 GSTM2P28161 218 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 EPHA4P54764 986 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 MTPNP58546 118 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 OLR1P78380 273 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 SRSF11Q05519 484 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 TGM3Q08188 693 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 PWP1Q13610 501 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 KPNB1Q14974 876 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 GTDC1Q4AE62 458 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 CCDC157Q569K6 752 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 WASHC2DQ5SRD0 308 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 FBXW10Q5XX13 1052 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 PLXDC1Q8IUK5 500 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 MCATQ8IVS2 390 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 CLECL1Q8IZS7 167 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 FBXW8Q8N3Y1 598 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ZNF655Q8N720 491 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 SRFBP1Q8NEF9 429 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 VPS37AQ8NEZ2 397 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 WDR60Q8WVS4 1066 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 GTF2H4Q92759 462 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ATOH1Q92858 354 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 CIDECQ96AQ7 238 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 EXOSC8Q96B26 276 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 TESCQ96BS2 214 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 MIEF2Q96C03 454 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 TM4SF18Q96CE8 201 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 AURKBQ96GD4 344 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 TCTN2Q96GX1 697 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 PANX1Q96RD7 426 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 INPP5KQ9BT40 448 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 THUMPD3Q9BV44 507 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 DUSP26Q9BV47 211 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 MMADHCQ9H3L0 296 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 DENND2DQ9H6A0 471 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 REEP4Q9H6H4 257 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 RMND5AQ9H871 391 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ANKMY1Q9P2S6 941 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 PILRAQ9UKJ1 303 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 TP53BP1Q12888 1972 aaPredicted RBP3.52□□□□□ -1.85
RTN4-208ENST00000404909 TLCD2A6NGC4 264 aa3.52□□□□□ -1.85
RTN4-208ENST00000404909 URADA6NGE7 173 aa3.52□□□□□ -1.85
RTN4-208ENST00000404909 FXYD1O00168 92 aa3.52□□□□□ -1.85
RTN4-208ENST00000404909 YKT6O15498 198 aa3.52□□□□□ -1.85
RTN4-208ENST00000404909 PRMT3O60678 531 aa3.52□□□□□ -1.85
RTN4-208ENST00000404909 FKBP9O95302 570 aa3.52□□□□□ -1.85
RTN4-208ENST00000404909 RPLP0P05388 317 aaKnown RBP3.52□□□□□ -1.85
RTN4-208ENST00000404909 FAM58BPP0C7Q3 252 aa3.52□□□□□ -1.85
RTN4-208ENST00000404909 SLC6A2P23975 617 aa3.52□□□□□ -1.85
RTN4-208ENST00000404909 ATP5A1P25705 553 aaKnown RBP3.52□□□□□ -1.85
RTN4-208ENST00000404909 CD1CP29017 333 aa3.52□□□□□ -1.85
RTN4-208ENST00000404909 CSF2RBP32927 897 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms