RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PFASO15067 1338 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 MYO3BQ8WXR4 1341 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 SNAPC4Q5SXM2 1469 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 DISP3Q9P2K9 1392 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 TOP2AP11388 1531 aaKnown RBP3.84□□□□□ -1.79
HMGB1-204ENST00000399489 LOC100506127A0A0U1RQW1 187 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 TTC26A0AVF1 554 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 BTBD17A6NE02 478 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 RSPH10B2B2RC85 870 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 H0YIZ8 118 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 FCMRO60667 390 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 SERPINI2O75830 405 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 TMCC1O94876 653 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 GAS8O95995 478 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 MOCS2O96007 188 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-204ENST00000399489 IGHV2-70P01814 119 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 CRYGCP07315 174 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 CHRNGP07510 517 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 NPSP0C0P6 89 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 RSPH10BP0C881 870 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 TFPIP10646 304 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 PNMTP11086 282 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 AKR1A1P14550 325 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 MYL6BP14649 208 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 HPGDP15428 266 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 CHATP28329 748 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 SOX2P48431 317 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 CCNHP51946 323 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-204ENST00000399489 PLTPP55058 493 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 CLDN15P56746 228 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 MRPS15P82914 257 aaKnown RBP3.84□□□□□ -1.79
HMGB1-204ENST00000399489 SELPLGQ14242 412 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 RBBP5Q15291 538 aaKnown RBP3.84□□□□□ -1.79
HMGB1-204ENST00000399489 NPTX1Q15818 432 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 Q3ZCU0 254 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 DCAF6Q58WW2 860 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 KIAA1755Q5JYT7 1200 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 PRAMEF5Q5TYX0 476 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 AGBL2Q5U5Z8 902 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 PRAMEF6Q5VXH4 476 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 GGNBP1Q5YKI7 109 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 FAM166AQ6J272 317 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 DEGS2Q6QHC5 323 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 CBLN3Q6UW01 205 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 KDM7AQ6ZMT4 941 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 TFAP2DQ7Z6R9 452 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 TMPRSS11BQ86T26 416 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 KATNAL2Q8IYT4 538 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 TCAIMQ8N3R3 496 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 SPATA6LQ8N4H0 392 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 CSGALNACT2Q8N6G5 542 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 SCCPDHQ8NBX0 429 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 ERMNQ8TAM6 284 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 SLC26A7Q8TE54 656 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 TRIB2Q92519 343 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 ZBTB9Q96C00 473 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF707Q96C28 371 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF582Q96NG8 517 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-204ENST00000399489 NPAS2Q99743 824 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 SLC2A11Q9BYW1 496 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 DCLRE1BQ9H816 532 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 NEK6Q9HC98 313 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 ZFP14Q9HCL3 533 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 LZTFL1Q9NQ48 299 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 TXNDC16Q9P2K2 825 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 RNF14Q9UBS8 474 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 IFT52Q9Y366 437 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 NME7Q9Y5B8 376 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 ZHX2Q9Y6X8 837 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 DNMBPQ6XZF7 1577 aa3.84□□□□□ -1.79
HMGB1-204ENST00000399489 MS4A18H0YCH9 400 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 J3QR06 171 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 KLF11O14901 512 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 KCNJ13O60928 360 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 SDC3O75056 442 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 CDH16O75309 829 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 TRIM3O75382 744 aaPredicted RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 TM7SF2O76062 418 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 MBD3O95983 291 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF44P15621 663 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 ANXA13P27216 316 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 CD1BP29016 333 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 ARRB2P32121 409 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 LEPRP48357 1165 aaKnown RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 METAP2P50579 478 aaKnown RBP eCLIP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 TNFSF10P50591 281 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 PPT1P50897 306 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 HOXA4Q00056 320 aaPredicted RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 MYBPC1Q00872 1141 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 CSTF1Q05048 431 aaKnown RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 TROAPQ12815 778 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 KPNB1Q14974 876 aaKnown RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 EXOC3L2Q2M3D2 409 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 KLHL40Q2TBA0 621 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 HIKESHIQ53FT3 197 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 SEL1L3Q68CR1 1132 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF772Q68DY9 489 aaPredicted RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 ASPHD2Q6ICH7 369 aa3.84□□□□□ -1.8
HMGB1-204ENST00000399489 METTL2BQ6P1Q9 378 aaKnown RBP3.84□□□□□ -1.8
HMGB1-204ENST00000399489 ERICH5Q6P6B1 374 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms