RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 EFCAB11Q9BUY7 163 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 SLC35C2Q9NQQ7 365 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 SPASTQ9UBP0 616 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF282Q9UDV7 671 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 RPH3AQ9Y2J0 694 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 IFT52Q9Y366 437 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 GMPPBQ9Y5P6 360 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 KIAA1671Q9BY89 1806 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 SLC16A6O15403 523 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 SUV39H1O43463 412 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 ANGPTL1O95841 491 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 LINC00271P0C7V0 271 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 ITGAMP11215 1152 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 HLA-EP13747 358 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 TIA1P31483 386 aaKnown RBP eCLIP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 RYKP34925 604 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 RPL3P39023 403 aaKnown RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 MAGEA2P43356 314 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 TPTEP56180 551 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 SELENBP1Q13228 472 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 VEZF1Q14119 521 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 GRIN2CQ14957 1233 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 SF1Q15637 639 aaKnown RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 CCSMST1Q4G0I0 132 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 ANKRD34AQ69YU3 496 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 DHRS4L2Q6PKH6 230 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 LILRA3Q8N6C8 439 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 C11orf65Q8NCR3 313 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 FOXJ1Q92949 421 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 PLEKHA8Q96JA3 519 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 DOK1Q99704 481 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 USB1Q9BQ65 265 aaKnown RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 DGCR6LQ9BY27 220 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 OR2AG1Q9H205 316 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 SP140LQ9H930 580 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 M0QX08 132 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 SLC1A7O00341 560 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 SEC14L2O76054 403 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 OR5F1O95221 314 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 CYP17A1P05093 508 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 HOXB9P17482 250 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 PDHA2P29803 388 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 WNT3P56703 355 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 SLC14A1Q13336 389 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 TEAD4Q15561 434 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 TCEAL5Q5H9L2 206 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 FAM109BQ6ICB4 259 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 XKR5Q6UX68 686 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 CBLL1Q75N03 491 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 TMPRSS9Q7Z410 1059 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 RASGRP3Q8IV61 690 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 PGBD3Q8N328 593 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 SUSD6Q92537 303 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 TAMM41Q96BW9 452 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 DTD2Q96FN9 168 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF514Q96K75 400 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 ALPK1Q96QP1 1244 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 OR4K3Q96R72 315 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 DPH2Q9BQC3 489 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 MCOLN1Q9GZU1 580 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 EPHX3Q9H6B9 360 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 ITM2CQ9NQX7 267 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 KRT84Q9NSB2 600 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 WDR70Q9NW82 654 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 SNX8Q9Y5X2 465 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 LTBP2Q14767 1821 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 GABRR3A8MPY1 467 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 TAF4O00268 1085 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 NDUFS6O75380 124 aaKnown RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 DIRAS1O95057 198 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 CYP4B1P13584 511 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 POLR2IP36954 125 aaKnown RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 C21orf58P58505 322 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 ISL1P61371 349 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 CHRNEQ04844 493 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 SLBPQ14493 270 aaKnown RBP eCLIP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 FGD3Q5JSP0 725 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 VTCN1Q7Z7D3 282 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 CHTF18Q8WVB6 975 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 NEIL2Q969S2 332 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 UBE2E3Q969T4 207 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 EFHD2Q96C19 240 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 NUS1Q96E22 293 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 OMA1Q96E52 524 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 HHIPQ96QV1 700 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 NAA50Q9GZZ1 169 aaKnown RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 LHPPQ9H008 270 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 LTB4R2Q9NPC1 389 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 BRD7Q9NPI1 651 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 EXD2Q9NVH0 621 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 ABCG2Q9UNQ0 655 aa9.26□□□□□ -0.93
COL6A3-204ENST00000392003 LAMA2P24043 3122 aaKnown RBP9.26□□□□□ -0.93
COL6A3-204ENST00000392003 SCN2BO60939 215 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 MITFO75030 526 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 DNAJB5O75953 348 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 C1orf105O95561 183 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 C1GALT1C1LP0DN25 315 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 AGXTP21549 392 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 HSD17B2P37059 387 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 CRATP43155 626 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms