RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SMIM10Q96HG1 83 aa2.21□□□□□ -2.05
VPS54-202ENST00000354504 NAF1Q96HR8 494 aaKnown RBP2.21□□□□□ -2.05
VPS54-202ENST00000354504 ELMO2Q96JJ3 720 aa2.21□□□□□ -2.05
VPS54-202ENST00000354504 EGLN2Q96KS0 407 aa2.21□□□□□ -2.05
VPS54-202ENST00000354504 ZNF558Q96NG5 402 aa2.21□□□□□ -2.05
VPS54-202ENST00000354504 GABRG3Q99928 467 aa2.21□□□□□ -2.05
VPS54-202ENST00000354504 VKORC1Q9BQB6 163 aa2.21□□□□□ -2.05
VPS54-202ENST00000354504 NUSAP1Q9BXS6 441 aaKnown RBP2.21□□□□□ -2.05
VPS54-202ENST00000354504 ABCG8Q9H221 673 aa2.21□□□□□ -2.05
VPS54-202ENST00000354504 NANOGQ9H9S0 305 aa2.21□□□□□ -2.05
VPS54-202ENST00000354504 CFAP97Q9P2B7 532 aa2.21□□□□□ -2.05
VPS54-202ENST00000354504 CES1P1Q9UKY3 287 aa2.21□□□□□ -2.05
VPS54-202ENST00000354504 PMF1-BGLAPU3KQ54 211 aa2.21□□□□□ -2.05
VPS54-202ENST00000354504 ANK2Q01484 3957 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 GIMAP1-GIMAP5A0A087WTJ2 511 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 POM121BA6NF01 834 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 H0YIV9 168 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 H3BUI4 141 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 FFAR1O14842 300 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 FFAR3O14843 346 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 SLC16A6O15403 523 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CCL16O15467 120 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 FFAR2O15552 330 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 FKBP6O75344 327 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 OR4F21O95013 312 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CPNE6O95741 557 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ALPLP05186 524 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 LYNP07948 512 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 SERPINF2P08697 491 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ENO2P09104 434 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 UROSP10746 265 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 G6PDP11413 515 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 TDGF1P13385 188 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 GFAPP14136 432 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 TYRP14679 529 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CTPS1P17812 591 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 SDC1P18827 310 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 GGT1P19440 569 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 DDX6P26196 483 aaKnown RBP eCLIP2.21□□□□□ -2.06
VPS54-202ENST00000354504 CFPP27918 469 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 HOXD10P28358 340 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 GABRR2P28476 465 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 HTR1EP28566 365 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 FMO4P31512 558 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 PIGAP37287 484 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 GRIA3P42263 894 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 HALP42357 657 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 GABRA4P48169 554 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CCNHP51946 323 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 KDSRQ06136 332 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 DUSP8Q13202 625 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 GAB1Q13480 694 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ZIC1Q15915 447 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 GRAMD1BQ3KR37 738 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 GTDC1Q4AE62 458 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 RABL3Q5HYI8 236 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ZNF852Q6ZMS4 543 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CCDC80Q76M96 950 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 GPR149Q86SP6 731 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CRLF3Q8IUI8 442 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CTAGE3PQ8IX95 158 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CLYBLQ8N0X4 340 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 MMP21Q8N119 569 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 AMER3Q8N944 861 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ZNF485Q8NCK3 441 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 TMIEQ8NEW7 156 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 PABPC5Q96DU9 382 aaKnown RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 PHF21BQ96EK2 531 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 GIMAP5Q96F15 307 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 DTD2Q96FN9 168 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 APIPQ96GX9 242 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ZNF764Q96H86 408 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 FAM193BQ96PV7 902 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 RAD9AQ99638 391 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 INPP5KQ9BT40 448 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ILKAPQ9H0C8 392 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.21□□□□□ -2.06
VPS54-202ENST00000354504 PLK2Q9NYY3 685 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 NUDT4Q9NZJ9 180 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 KCMF1Q9P0J7 381 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ACAD8Q9UKU7 415 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 PSMD13Q9UNM6 376 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 WDR37Q9Y2I8 494 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 TIMM22Q9Y584 194 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ARHGAP21Q5T5U3 1957 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 PRRC2CQ9Y520 2896 aaKnown RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 ATP6AP2A0A1C7CYW4 349 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 A0A1W2PS29 197 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 EME2A4GXA9 379 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 RFXAPO00287 272 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 PLK4O00444 970 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 AZIN1O14977 448 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 RAD51BO15315 384 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 TBX19O60806 448 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ATP6AP2O75787 350 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 OR6B1O95007 311 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 KCNK5O95279 499 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 C1orf105O95561 183 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 SRPRAP08240 638 aaKnown RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 LINC00032P0C843 101 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms