RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 EVA1BQ9NVM1 165 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 MARCH2Q9P0N8 246 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 GATCO43716 136 aaKnown RBP12.21□□□□□ -0.45
COL6A3-203ENST00000353578 PRKCHP24723 683 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 BMXP51813 675 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 SLC39A4Q6P5W5 647 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 OR1M1Q8NGA1 313 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 NIPSNAP3BQ9BS92 247 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 AGPAT4Q9NRZ5 378 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 SLC12A8A0AV02 714 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 TSPAN8P19075 237 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 BMP8BP34820 402 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 BMP8AQ7Z5Y6 402 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 CCDC71LQ8N9Z2 235 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 OR4Q3Q8NH05 313 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 POLHQ9Y253 713 aa12.21□□□□□ -0.45
COL6A3-203ENST00000353578 NAE1Q13564 534 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 TBCEQ15813 527 aaPredicted RBP12.21□□□□□ -0.46
COL6A3-203ENST00000353578 MTFR2Q6P444 385 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 BRINP3Q76B58 766 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 OCSTAMPQ9BR26 566 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 RBFOX1Q9NWB1 397 aaKnown RBP12.21□□□□□ -0.46
COL6A3-203ENST00000353578 CDC14AQ9UNH5 594 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 MAP4K5Q9Y4K4 846 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 HRH3Q9Y5N1 445 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 OTOFQ9HC10 1997 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 SLC30A6Q6NXT4 461 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 OTOP1Q7RTM1 612 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 PCDHAC1Q9H158 963 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 EIF2B4Q9UI10 523 aaKnown RBP12.21□□□□□ -0.46
COL6A3-203ENST00000353578 DIP2AQ14689 1571 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 A0A096LPI6 279 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 LCHNA4D1U4 455 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 CLIC1O00299 241 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 HSPA7P48741 367 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 NFKB2Q00653 900 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 CHRFAM7AQ494W8 412 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 UBAP2Q5T6F2 1119 aaKnown RBP12.21□□□□□ -0.46
COL6A3-203ENST00000353578 FANK1Q8TC84 345 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 MAFFQ9ULX9 164 aa12.21□□□□□ -0.46
COL6A3-203ENST00000353578 MEGF11A6BM72 1044 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 SCGB1D1O95968 90 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 KLRC2P26717 231 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 AQP1P29972 269 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 WNT3AP56704 352 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 CHIT1Q13231 466 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 GRIN2CQ14957 1233 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 UQCC3Q6UW78 93 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 CYS1Q717R9 158 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 CELF6Q96J87 481 aaKnown RBP12.2□□□□□ -0.46
COL6A3-203ENST00000353578 TSSK3Q96PN8 268 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 TSSK6Q9BXA6 273 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 OXTRP30559 389 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 RRAS2P62070 204 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-203ENST00000353578 DHCR24Q15392 516 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF514Q96K75 400 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-203ENST00000353578 SDHAF2Q9NX18 166 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 WIF1Q9Y5W5 379 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 SLC22A31A6NKX4 558 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 H3F3AP84243 136 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 SLC51BQ86UW2 128 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 HIST1H2AAQ96QV6 131 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 MTIF3Q9H2K0 278 aaKnown RBP12.2□□□□□ -0.46
COL6A3-203ENST00000353578 PTPRHQ9HD43 1115 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 SMOXQ9NWM0 555 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 ERVK-18Q9QC07 812 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 RFXAPO00287 272 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 EPOP01588 193 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 HSD3B2P26439 372 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 KCNJ11Q14654 390 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 MEP1AQ16819 746 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 UPP1Q16831 310 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 NIPAL3Q6P499 406 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 TPRA1Q86W33 373 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 SLC7A5P1Q8MH63 180 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 YIPF7Q8N8F6 280 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 OR2T33Q8NG76 320 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 CYP2W1Q8TAV3 490 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 EBF4Q9BQW3 602 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 OSGEPL1Q9H4B0 414 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 TEX264Q9Y6I9 313 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 DIRAS1O95057 198 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 EDNRAP25101 427 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 MAN2A2P49641 1150 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 TRAM2Q15035 370 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 FAM162BQ5T6X4 162 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 SLC35G5Q96KT7 338 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 CEPT1Q9Y6K0 416 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 KIAA0100Q14667 2235 aaKnown RBP12.2□□□□□ -0.46
COL6A3-203ENST00000353578 ARVCFO00192 962 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 BANF1O75531 89 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 LYPLA2O95372 231 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 MTPNP58546 118 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 YBEYP58557 167 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-203ENST00000353578 METTL7BQ6UX53 244 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 DNAAF1Q8NEP3 725 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 RSC1A1Q92681 617 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 TRIB3Q96RU7 358 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 GOT1P17174 413 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 CLEC6AQ6EIG7 209 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms