RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 PGRP06401 933 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 ZNF182P17025 639 aaPredicted RBP12.28□□□□□ -0.44
CLK3-201ENST00000345005 SDC1P18827 310 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 MATN1P21941 496 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 CXCR2P25025 360 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 S100A3P33764 101 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 PIK3CBP42338 1070 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 TMED10P49755 219 aaKnown RBP12.28□□□□□ -0.44
CLK3-201ENST00000345005 ITGADQ13349 1161 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 PWP1Q13610 501 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 RPE65Q16518 533 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 MAPKAPK3Q16644 382 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 FAM174BQ3ZCQ3 159 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 ANKDD1AQ495B1 522 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 ZC3H12BQ5HYM0 836 aaKnown RBP12.28□□□□□ -0.44
CLK3-201ENST00000345005 THOC7Q6I9Y2 204 aaKnown RBP12.28□□□□□ -0.44
CLK3-201ENST00000345005 SLC2A7Q6PXP3 512 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 WASH2PQ6VEQ5 465 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 GCNT7Q6ZNI0 430 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 IFNEQ86WN2 208 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 ZC3H7AQ8IWR0 971 aaKnown RBP12.28□□□□□ -0.44
CLK3-201ENST00000345005 OFCC1Q8IZS5 231 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 C2orf73Q8N5S3 287 aaPredicted RBP12.28□□□□□ -0.44
CLK3-201ENST00000345005 SLC15A4Q8N697 577 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 KRTCAP2Q8N6L1 136 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 TMEM145Q8NBT3 493 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 TSTD1Q8NFU3 115 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 CHTF18Q8WVB6 975 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 TESCQ96BS2 214 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 TOE1Q96GM8 510 aaKnown RBP12.28□□□□□ -0.44
CLK3-201ENST00000345005 NELL2Q99435 816 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 PITHD1Q9GZP4 211 aaPredicted RBP12.28□□□□□ -0.44
CLK3-201ENST00000345005 C6orf106Q9H6K1 298 aaPredicted RBP12.28□□□□□ -0.44
CLK3-201ENST00000345005 WASH6PQ9NQA3 447 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 TAC3Q9UHF0 121 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 CYP8B1Q9UNU6 501 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 PCDHGB1Q9Y5G3 927 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 ORC6Q9Y5N6 252 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 GPC6Q9Y625 555 aaPredicted RBP12.28□□□□□ -0.44
CLK3-201ENST00000345005 ARHGEF17Q96PE2 2063 aaPredicted RBP12.28□□□□□ -0.44
CLK3-201ENST00000345005 G3V2T6 193 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 BOLA2-SMG1P6H3BVE0 249 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 CNOT3O75175 753 aaKnown RBP12.27□□□□□ -0.44
CLK3-201ENST00000345005 ZNF217O75362 1048 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 IGHV4-34P06331 123 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 CCDC159P0C7I6 412 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 MTHFD1P11586 935 aaKnown RBP12.27□□□□□ -0.44
CLK3-201ENST00000345005 IL9P15248 144 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 IL1RNP18510 177 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 PRPS1L1P21108 318 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 GRK3P35626 688 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 RABIFP47224 123 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 RAB28P51157 221 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 SRP54P61011 504 aaKnown RBP12.27□□□□□ -0.44
CLK3-201ENST00000345005 RPS13P62277 151 aaKnown RBP12.27□□□□□ -0.44
CLK3-201ENST00000345005 TFF2Q03403 129 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 DPY19L1Q2PZI1 675 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 SPANXN4Q5MJ08 99 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 C6orf141Q5SZD1 244 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 DEPDC1Q5TB30 811 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 GALNT18Q6P9A2 607 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 TMIGD1Q6UXZ0 262 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 DLEU7Q6UYE1 221 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 RD3Q7Z3Z2 195 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 ABI3BPQ7Z7G0 1075 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 FAM129CQ86XR2 697 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 SYT12Q8IV01 421 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 ADHFE1Q8IWW8 467 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 SPARTQ8N0X7 666 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 PARP8Q8N3A8 854 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 TMCO5AQ8N6Q1 288 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 PJA1Q8NG27 643 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 OR2L8Q8NGY9 312 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 CLHC1Q8NHS4 586 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 STARD8Q92502 1023 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 TSACCQ96A04 125 aaPredicted RBP12.27□□□□□ -0.44
CLK3-201ENST00000345005 C11orf24Q96F05 449 aaPredicted RBP12.27□□□□□ -0.44
CLK3-201ENST00000345005 PDXPQ96GD0 296 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 TSSK3Q96PN8 268 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 OR52E6Q96RD3 313 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 AIF1LQ9BQI0 150 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 PSD2Q9BQI7 771 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 NEURL2Q9BR09 285 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 ADNPQ9H2P0 1102 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 NECTIN3Q9NQS3 549 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 PRDM8Q9NQV8 689 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 WNT16Q9UBV4 365 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 C3orf18Q9UK00 162 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 PPT2Q9UMR5 302 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 HSPE1-MOB4S4R3N1 261 aa12.27□□□□□ -0.44
CLK3-201ENST00000345005 SCELO95171 688 aa12.27□□□□□ -0.45
CLK3-201ENST00000345005 GGT1P19440 569 aa12.27□□□□□ -0.45
CLK3-201ENST00000345005 TACR1P25103 407 aa12.27□□□□□ -0.45
CLK3-201ENST00000345005 NDUFS1P28331 727 aa12.27□□□□□ -0.45
CLK3-201ENST00000345005 CD6P30203 668 aa12.27□□□□□ -0.45
CLK3-201ENST00000345005 RYKP34925 604 aa12.27□□□□□ -0.45
CLK3-201ENST00000345005 ASMTP46597 345 aa12.27□□□□□ -0.45
CLK3-201ENST00000345005 CCR8P51685 355 aa12.27□□□□□ -0.45
CLK3-201ENST00000345005 PLA2G16P53816 162 aa12.27□□□□□ -0.45
CLK3-201ENST00000345005 RAD23AP54725 363 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms