RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 LEXMQ3ZCV2 418 aa21.47■■□□□ 1.03
TRIM28-202ENST00000341753 XKR6Q5GH73 641 aa21.47■■□□□ 1.03
TRIM28-202ENST00000341753 FAM209AQ5JX71 171 aa21.47■■□□□ 1.03
TRIM28-202ENST00000341753 SLC44A2Q8IWA5 706 aaPredicted RBP21.47■■□□□ 1.03
TRIM28-202ENST00000341753 TRIM48Q8IWZ4 208 aa21.47■■□□□ 1.03
TRIM28-202ENST00000341753 C1orf52Q8N6N3 182 aaKnown RBP21.47■■□□□ 1.03
TRIM28-202ENST00000341753 GPATCH2Q9NW75 528 aa21.47■■□□□ 1.03
TRIM28-202ENST00000341753 SCAMP2O15127 329 aaKnown RBP21.46■■□□□ 1.03
TRIM28-202ENST00000341753 CCNB2O95067 398 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 SLC6A12P48065 614 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 ATP13A5Q4VNC0 1218 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 IFI44LQ53G44 452 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 METTL2BQ6P1Q9 378 aaKnown RBP21.46■■□□□ 1.03
TRIM28-202ENST00000341753 ZNF438Q7Z4V0 828 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 AQP11Q8NBQ7 271 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 FLCNQ8NFG4 579 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 NPIPB15A6NHN6 443 aaPredicted RBP21.46■■□□□ 1.03
TRIM28-202ENST00000341753 IGFBP1P08833 259 aaPredicted RBP21.46■■□□□ 1.03
TRIM28-202ENST00000341753 PCGF2P35227 344 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 BCL2L1Q07817 233 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 TAF12Q16514 161 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 TIMM50Q3ZCQ8 353 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 DGKKQ5KSL6 1271 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 LYPD8Q6UX82 237 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 SERPINA13PQ6UXR4 307 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 BCDIN3DQ7Z5W3 292 aaKnown RBP21.46■■□□□ 1.03
TRIM28-202ENST00000341753 NPAS3Q8IXF0 933 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 OR5AK3PQ8NH89 298 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 UBASH3BQ8TF42 649 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 FOXJ1Q92949 421 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 VPS35Q96QK1 796 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 GRIP1Q9Y3R0 1128 aa21.46■■□□□ 1.03
TRIM28-202ENST00000341753 E7EQ34 232 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 PXNP49023 591 aaPredicted RBP21.45■■□□□ 1.02
TRIM28-202ENST00000341753 CDC42P60953 191 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 CHST9Q7L1S5 443 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 APCDD1Q8J025 514 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 SLC34A3Q8N130 599 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 CRIPAKQ8N1N5 446 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 CADM2Q8N3J6 435 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 CDCA4Q9BXL8 241 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 SLC12A9Q9BXP2 914 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 CREBZFQ9NS37 354 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 DNAJC27Q9NZQ0 273 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 DPM1O60762 260 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 ENTPD6O75354 484 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 ANXA4P09525 319 aaPredicted RBP21.45■■□□□ 1.02
TRIM28-202ENST00000341753 JUPP14923 745 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 SSTR4P31391 388 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 NSG1P42857 185 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 CDKN3Q16667 212 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 MFSD4BQ5TF39 518 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 PLAG1Q6DJT9 500 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 C19orf48Q6RUI8 117 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 WDR53Q7Z5U6 358 aaPredicted RBP21.45■■□□□ 1.02
TRIM28-202ENST00000341753 NECTIN4Q96NY8 510 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 TRAPPC4Q9Y296 219 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 PCDHGB2Q9Y5G2 931 aa21.45■■□□□ 1.02
TRIM28-202ENST00000341753 UGT2B17O75795 530 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 SOX14O95416 240 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 GASTP01350 101 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 CYP2A7P20853 494 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 CHMP24386 653 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 TPGS1Q6ZTW0 290 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 NLRP8Q86W28 1048 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 TAPBPLQ9BX59 468 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 CD84Q9UIB8 345 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 A0A075B6Q4 140 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 PRAMEF33A0A0G2JMD5 474 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 PRAMEF10O60809 474 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 PFN3P60673 137 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 HOXC5Q00444 222 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 E2F2Q14209 437 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 ZNF385BQ569K4 471 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 SLC8B1Q6J4K2 584 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 PAQR6Q6TCH4 344 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 ASB11Q8WXH4 323 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 RNF170Q96K19 258 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 TRPM5Q9NZQ8 1165 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 MAP4K5Q9Y4K4 846 aa21.44■■□□□ 1.02
TRIM28-202ENST00000341753 GNG14A0A1W2PPG7 69 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 ITGA2P17301 1181 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 ARPC4P59998 168 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 RAE1P78406 368 aaKnown RBP21.43■■□□□ 1.02
TRIM28-202ENST00000341753 ELAVL2Q12926 359 aaKnown RBP21.43■■□□□ 1.02
TRIM28-202ENST00000341753 KLHL17Q6TDP4 642 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 FAM131AQ6UXB0 335 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 C9orf43Q8TAL5 461 aaPredicted RBP21.43■■□□□ 1.02
TRIM28-202ENST00000341753 MED8Q96G25 268 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 SRRQ9GZT4 340 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 ASAH2Q9NR71 780 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 ACER3Q9NUN7 267 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 CLN6Q9NWW5 311 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 HMX3A6NHT5 357 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 ALX3O95076 343 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 HYAL2Q12891 473 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 SCARB2Q14108 478 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 EEF1AKMT2Q5JPI9 291 aaKnown RBP21.43■■□□□ 1.02
TRIM28-202ENST00000341753 SPOUT1Q5T280 376 aaKnown RBP21.43■■□□□ 1.02
TRIM28-202ENST00000341753 RNF130Q86XS8 419 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms