RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 SAMD4BQ5PRF9 694 aaKnown RBP16.52■□□□□ 0.23
CLDN4-201ENST00000340958 IKBIPQ70UQ0 350 aa16.52■□□□□ 0.23
CLDN4-201ENST00000340958 DPP10Q8N608 796 aa16.52■□□□□ 0.23
CLDN4-201ENST00000340958 C19orf47Q8N9M1 422 aaKnown RBP16.52■□□□□ 0.23
CLDN4-201ENST00000340958 OR2A5Q96R48 311 aa16.52■□□□□ 0.23
CLDN4-201ENST00000340958 TBCDQ9BTW9 1192 aa16.52■□□□□ 0.23
CLDN4-201ENST00000340958 NLNQ9BYT8 704 aa16.52■□□□□ 0.23
CLDN4-201ENST00000340958 DENND2DQ9H6A0 471 aaPredicted RBP16.52■□□□□ 0.23
CLDN4-201ENST00000340958 SLAMF8Q9P0V8 285 aa16.52■□□□□ 0.23
CLDN4-201ENST00000340958 TP53BP1Q12888 1972 aaPredicted RBP16.51■□□□□ 0.23
CLDN4-201ENST00000340958 C15orf38-AP3S2A0A0A6YYH1 394 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 GABRR3A8MPY1 467 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 H0YGG7 62 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 STAMBPO95630 424 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 ZNF806P0C7X5 589 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 DDX5P17844 614 aaKnown RBP16.51■□□□□ 0.23
CLDN4-201ENST00000340958 C21orf58P58505 322 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 ARF3P61204 181 aaPredicted RBP16.51■□□□□ 0.23
CLDN4-201ENST00000340958 BTN3A2P78410 334 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 SLC9A5Q14940 896 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 CACNA1EQ15878 2313 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 ANXA8L1Q5VT79 327 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 PRR23CQ6ZRP0 262 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 VN1R4Q7Z5H5 301 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 UBE3DQ7Z6J8 389 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 ARPINQ7Z6K5 226 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 NT5CQ8TCD5 201 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 SAP25Q8TEE9 199 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 GTF2H4Q92759 462 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 STMN2Q93045 179 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 MAP3K3Q99759 626 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 C1GALT1Q9NS00 363 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 SOHLH2Q9NX45 425 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 PILRAQ9UKJ1 303 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 KLK4Q9Y5K2 254 aa16.51■□□□□ 0.23
CLDN4-201ENST00000340958 TRIM38O00635 465 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 ARHGAP33O14559 1287 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 RFXANKO14593 260 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 DUX1O43812 170 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 SORBS2O94875 1100 aaKnown RBP16.5■□□□□ 0.23
CLDN4-201ENST00000340958 LAMP1P11279 417 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 ATXN3P54252 364 aaPredicted RBP16.5■□□□□ 0.23
CLDN4-201ENST00000340958 MC1RQ01726 317 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 RELAQ04206 551 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 HYAL2Q12891 473 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 NR0B2Q15466 257 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 PIGGQ5H8A4 983 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 ZC3H12BQ5HYM0 836 aaKnown RBP16.5■□□□□ 0.23
CLDN4-201ENST00000340958 WASHC2DQ5SRD0 308 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 FRMPD2BQ6IN97 320 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 ABHD17CQ6PCB6 329 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 PGM2L1Q6PCE3 622 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 MSANTD1Q6ZTZ1 278 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 KCT2Q8NC54 265 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 OR8J2Q8NGG1 315 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 OR8K5Q8NH50 307 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 DNAJB8Q8NHS0 232 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 ZCCHC10Q8TBK6 192 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 TRAPPC9Q96Q05 1148 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 PANX1Q96RD7 426 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 ZNF717Q9BY31 904 aaPredicted RBP16.5■□□□□ 0.23
CLDN4-201ENST00000340958 SLC6A16Q9GZN6 736 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 DDX31Q9H8H2 851 aaKnown RBP16.5■□□□□ 0.23
CLDN4-201ENST00000340958 CAPN10Q9HC96 672 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 IRAK4Q9NWZ3 460 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 FAM120CQ9NX05 1096 aaKnown RBP16.5■□□□□ 0.23
CLDN4-201ENST00000340958 TMEM181Q9P2C4 612 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 DCHS1Q96JQ0 3298 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 SPTBN4Q9H254 2564 aa16.5■□□□□ 0.23
CLDN4-201ENST00000340958 LOC105369274A0A096LPK9 316 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 LOC102723532A0A0G2JNH3 316 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 GUCY1B2O75343 617 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 CPSF4O95639 269 aaKnown RBP16.49■□□□□ 0.23
CLDN4-201ENST00000340958 ZNF888P0CJ79 500 aaPredicted RBP16.49■□□□□ 0.23
CLDN4-201ENST00000340958 GIMD1P0DJR0 217 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 PIM1P11309 404 aaPredicted RBP16.49■□□□□ 0.23
CLDN4-201ENST00000340958 HIST1H1TP22492 207 aaPredicted RBP16.49■□□□□ 0.23
CLDN4-201ENST00000340958 SLC6A2P23975 617 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 GPR3P46089 330 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 GSTM5P46439 218 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 ARL4DP49703 201 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 GFERP55789 205 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 VSX2P58304 361 aaPredicted RBP16.49■□□□□ 0.23
CLDN4-201ENST00000340958 SLAMF1Q13291 335 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 CEACAM7Q14002 265 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 SUZ12Q15022 739 aaKnown RBP16.49■□□□□ 0.23
CLDN4-201ENST00000340958 ADPRMQ3LIE5 342 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 FAM71E1Q6IPT2 247 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 NANOGP8Q6NSW7 305 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 SLC23A3Q6PIS1 610 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 RNF44Q7L0R7 432 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 ABHD13Q7L211 337 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 OR4N4Q8N0Y3 316 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 CSNK1A1LQ8N752 337 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 HIPK4Q8NE63 616 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 OR2I1PQ8NGU4 316 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 WDR60Q8WVS4 1066 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 N4BP2L2Q92802 583 aaPredicted RBP16.49■□□□□ 0.23
CLDN4-201ENST00000340958 GAL3ST3Q96A11 431 aa16.49■□□□□ 0.23
CLDN4-201ENST00000340958 TCTN2Q96GX1 697 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms