RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PRMT1Q99873 361 aaKnown RBP2.86□□□□□ -1.95
HMGB1-201ENST00000326004 OVOL2Q9BRP0 275 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 IDI2Q9BXS1 227 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 DPEP2Q9H4A9 486 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 IL1RAPL2Q9NP60 686 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 RAB9BQ9NP90 201 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 B3GAT2Q9NPZ5 323 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 SPHK2Q9NRA0 654 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 TEX10Q9NXF1 929 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-201ENST00000326004 NCKAP1Q9Y2A7 1128 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 PCDHGA1Q9Y5H4 931 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 SNX5Q9Y5X3 404 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 ARAP3Q8WWN8 1544 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 AKNAQ7Z591 1439 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 CDK12Q9NYV4 1490 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-201ENST00000326004 WDR7Q9Y4E6 1490 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 ANKDD1BA6NHY2 528 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 ACSL4O60488 711 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 ATP9AO75110 1047 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 CLN5O75503 358 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 CRCPO75575 148 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 GLCEO94923 617 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 ZSCAN5DPP0CG00 497 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 C4BPBP20851 252 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 UGT1A4P22310 534 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 CTNNA2P26232 953 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 GIFP27352 417 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 CLK1P49759 484 aaKnown RBP2.85□□□□□ -1.95
HMGB1-201ENST00000326004 TMEM50BP56557 158 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 DHODHQ02127 395 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 SLC3A1Q07837 685 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 PPP2R5CQ13362 524 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 MORF4L2Q15014 288 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 SMU1Q2TAY7 513 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 CCDC92Q53HC0 331 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-201ENST00000326004 FASTKD1Q53R41 847 aaKnown RBP2.85□□□□□ -1.95
HMGB1-201ENST00000326004 ODF2Q5BJF6 829 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 AGAP6Q5VW22 663 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 SLC27A4Q6P1M0 643 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF613Q6PF04 617 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 IYDQ6PHW0 289 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 NUP93Q8N1F7 819 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 RNF149Q8NC42 400 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 OR10G7Q8NGN6 311 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 MOCOSQ96EN8 888 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 CDKN2AIPNLQ96HQ2 116 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 PCDHB18PQ96TA0 734 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 SYT11Q9BT88 431 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 VIPAS39Q9H9C1 493 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 MRPL17Q9NRX2 175 aaKnown RBP2.85□□□□□ -1.95
HMGB1-201ENST00000326004 NDE1Q9NXR1 346 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 TMOD3Q9NYL9 352 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 MIS18AQ9NYP9 233 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 POMT2Q9UKY4 750 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 RNF215Q9Y6U7 377 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 ADAMTS12P58397 1594 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 ACEP12821 1306 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 WIZO95785 1651 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 PCNX3Q9H6A9 2034 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 RGS12O14924 1447 aa2.85□□□□□ -1.95
HMGB1-201ENST00000326004 SHANK2Q9UPX8 1470 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 LRRD1A4D1F6 860 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 TRIM64A6NGJ6 449 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 TRIM64BA6NI03 449 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-201ENST00000326004 TCP10L2B9ZVM9 353 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 NPIPB9F8W1W9 429 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 H7C423 109 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 K7EQD1 137 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 MAGEB2O15479 319 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 TTI1O43156 1089 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 MTRF1O75570 445 aaKnown RBP2.84□□□□□ -1.95
HMGB1-201ENST00000326004 LETM1O95202 739 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-201ENST00000326004 DUS4LO95620 317 aaKnown RBP2.84□□□□□ -1.95
HMGB1-201ENST00000326004 DPEP1P16444 411 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 EDNRAP25101 427 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 SRD5A2P31213 254 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 GPR183P32249 361 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 HNF4AP41235 474 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 SLC1A3P43003 542 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 KHKP50053 298 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 SLC34A1Q06495 639 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 FASTKD3Q14CZ7 662 aaKnown RBP2.84□□□□□ -1.95
HMGB1-201ENST00000326004 MAPK11Q15759 364 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 ACKR1Q16570 336 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 MOGAT2Q3SYC2 334 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 C14orf177Q52M58 125 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 SPANXN4Q5MJ08 99 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 PLBD1Q6P4A8 553 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 C3P1Q6ZMU1 363 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 CCDC91Q7Z6B0 441 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 C5orf24Q7Z6I8 188 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 AQP12AQ8IXF9 295 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 TDHQ8IZJ6 230 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF444Q8N0Y2 327 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-201ENST00000326004 CARNMT1Q8N4J0 409 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 MSANTD4Q8NCY6 345 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 PTP4A1Q93096 173 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 AGAP3Q96P47 875 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 PAPOLGQ9BWT3 736 aaKnown RBP2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms