RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 MCM8Q9UJA3 840 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 MAN2B2Q9Y2E5 1009 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 PCDHGA4Q9Y5G9 962 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 C15orf38-AP3S2A0A0A6YYH1 394 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 ZNF860A6NHJ4 632 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 SOAT1P35610 550 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 RACK1P63244 317 aaKnown RBP15.71■□□□□ 0.11
USP4-201ENST00000265560 BNIP2Q12982 314 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 BIRC2Q13490 618 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 OR4C11Q6IEV9 310 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 HMBOX1Q6NT76 420 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 ENPP6Q6UWR7 440 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 VN1R4Q7Z5H5 301 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 ARPINQ7Z6K5 226 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 GJD3Q8N144 294 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 ZNF548Q8NEK5 533 aaPredicted RBP15.71■□□□□ 0.11
USP4-201ENST00000265560 MS4A6EQ96DS6 147 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 TPT1P8Q9HAU6 139 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 GPR27Q9NS67 375 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 AHSPQ9NZD4 102 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 P2RX6O15547 441 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 NME6O75414 186 aaPredicted RBP15.7■□□□□ 0.1
USP4-201ENST00000265560 C8orf89P0DMQ9 161 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 OLR1P78380 273 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 PPP1R8Q12972 351 aaKnown RBP15.7■□□□□ 0.1
USP4-201ENST00000265560 COX20Q5RI15 118 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 ZNF425Q6IV72 752 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 LCN8Q6JVE9 175 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 NETO1Q8TDF5 533 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 NSMCE2Q96MF7 247 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 CIB1Q99828 191 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 THEGQ9P2T0 379 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 KLHL3Q9UH77 587 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 ADGRE2Q9UHX3 823 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 MYOCOSA0A1B0GUC4 107 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 ELOVL7A1L3X0 281 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 CAPN5O15484 640 aaPredicted RBP15.7■□□□□ 0.1
USP4-201ENST00000265560 HOXB9P17482 250 aaPredicted RBP15.7■□□□□ 0.1
USP4-201ENST00000265560 HTR1EP28566 365 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 BLKP51451 505 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 RPS26P62854 115 aaKnown RBP15.7■□□□□ 0.1
USP4-201ENST00000265560 UBE2IP63279 158 aaKnown RBP15.7■□□□□ 0.1
USP4-201ENST00000265560 HSPB3Q12988 150 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 FCRL6Q6DN72 434 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 FIGLAQ6QHK4 219 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 ADGRG5Q8IZF4 528 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 MAGED4Q96JG8 741 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 TMEM74BQ9NUR3 256 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 FAM120CQ9NX05 1096 aaKnown RBP15.7■□□□□ 0.1
USP4-201ENST00000265560 C19orf67A6NJJ6 358 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 SAC3D1A6NKF1 404 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 KIF1CO43896 1103 aaKnown RBP15.7■□□□□ 0.1
USP4-201ENST00000265560 EPN2O95208 641 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 CSF2P04141 144 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 ACPPP15309 386 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 BTN3A2P78410 334 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 BNIP3Q12983 259 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 ZIC1Q15915 447 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 C18orf63Q68DL7 685 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 SZRD1Q7Z422 152 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 NUDT13Q86X67 352 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 TMEM102Q8N9M5 508 aaPredicted RBP15.7■□□□□ 0.1
USP4-201ENST00000265560 DOK4Q8TEW6 326 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 COQ8BQ96D53 544 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 MYNNQ9NPC7 610 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 MAP4K5Q9Y4K4 846 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 ATG4BQ9Y4P1 393 aa15.7■□□□□ 0.1
USP4-201ENST00000265560 A0A1B0GVT2 93 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 PGRMC2O15173 223 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 KDM1AO60341 852 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 PRMT3O60678 531 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 ERAL1O75616 437 aaKnown RBP15.69■□□□□ 0.1
USP4-201ENST00000265560 SLC7A1P30825 629 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 SLAMF1Q13291 335 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 DPY19L1Q2PZI1 675 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 TMEM26Q6ZUK4 368 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 PAQR7Q86WK9 346 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 PTRH1Q86Y79 214 aaKnown RBP15.69■□□□□ 0.1
USP4-201ENST00000265560 VPS37AQ8NEZ2 397 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 FAM162AQ96A26 154 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 SPACA7Q96KW9 195 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 SNX7Q9UNH6 387 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 PCDHB3Q9Y5E6 796 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 TCRBV5S2A0A599 114 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 EVPLLA8MZ36 301 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 PDLIM1O00151 329 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 CXCR6O00574 342 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 CLEC3AO75596 197 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 PSMA4P25789 261 aaKnown RBP15.69■□□□□ 0.1
USP4-201ENST00000265560 ABATP80404 500 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 NKG7Q16617 165 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 LRRC23Q53EV4 343 aaPredicted RBP15.69■□□□□ 0.1
USP4-201ENST00000265560 WLSQ5T9L3 541 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 NKAIN2Q5VXU1 208 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 ZFP1Q6P2D0 407 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 PRSS41Q7RTY9 318 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 ARL14Q8N4G2 192 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 CAMKK1Q8N5S9 505 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 ACOT4Q8N9L9 421 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 C1orf216Q8TAB5 229 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms