RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 AQP9O43315 295 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 ATP6V1B1P15313 513 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 ARRB2P32121 409 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 CRISP3P54108 245 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 TFF2Q03403 129 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 RFX4Q33E94 735 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 LEXMQ3ZCV2 418 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 DEF8Q6ZN54 512 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 OR56A1Q8NGH5 318 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 FBXO27Q8NI29 283 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 LRTOMTQ8WZ04 291 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 REXO5Q96IC2 774 aaKnown RBP11.09□□□□□ -0.63
VPS4A-201ENST00000254950 MSLNLQ96KJ4 702 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 MED16Q9Y2X0 877 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.09□□□□□ -0.63
VPS4A-201ENST00000254950 ASB1Q9Y576 335 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 PATJQ8NI35 1801 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 A0A1B0GTW7 788 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 FAM149AA5PLN7 773 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 FABP3P05413 133 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 C8orf89P0DMQ9 161 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 LAMP1P11279 417 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 UQCRBP14927 111 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 CDK6Q00534 326 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 LARS2Q15031 903 aaKnown RBP11.09□□□□□ -0.63
VPS4A-201ENST00000254950 IFI44LQ53G44 452 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 FAM20CQ8IXL6 584 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 TP53I13Q8NBR0 393 aaPredicted RBP11.09□□□□□ -0.63
VPS4A-201ENST00000254950 APOL4Q9BPW4 351 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 FNDC11Q9BVV2 318 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 WSB2Q9NYS7 404 aaPredicted RBP11.09□□□□□ -0.63
VPS4A-201ENST00000254950 TBC1D29Q9UFV1 150 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 MRTO4Q9UKD2 239 aaKnown RBP11.09□□□□□ -0.63
VPS4A-201ENST00000254950 SLC17A4Q9Y2C5 497 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 U3KQV3 271 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 H3BN98 237 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 GSTM5P46439 218 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 ALG11Q2TAA5 492 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 CEACAM20Q6UY09 585 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 FAM92BQ6ZTR7 304 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 HIPK1Q86Z02 1210 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 ZDHHC21Q8IVQ6 265 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 TMCO5AQ8N6Q1 288 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 OR9Q1Q8NGQ5 310 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 ZUFSPQ96AP4 578 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 TUBB1Q9H4B7 451 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 PDP2Q9P2J9 529 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 P2RX2Q9UBL9 471 aa11.09□□□□□ -0.63
VPS4A-201ENST00000254950 B4GALT2O60909 372 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 NUDT14O95848 222 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 CCNYL3P0C7X3 344 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 CSTF2P33240 577 aaKnown RBP eCLIP11.08□□□□□ -0.64
VPS4A-201ENST00000254950 ZNF630Q2M218 657 aaPredicted RBP11.08□□□□□ -0.64
VPS4A-201ENST00000254950 IRAK1BP1Q5VVH5 260 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 RNF175Q8N4F7 328 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 COX18Q8N8Q8 333 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 PROKR1Q8TCW9 393 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 OSBPL11Q9BXB4 747 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 KIR3DX1Q9H7L2 352 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 FAM47E-STBD1D6RA91 191 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 CREG1O75629 220 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 HTR1EP28566 365 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 PKLRP30613 574 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 AHRP35869 848 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 DPP6P42658 865 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 ZIK1Q3SY52 487 aaPredicted RBP11.08□□□□□ -0.64
VPS4A-201ENST00000254950 PAGE3Q5JUK9 113 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 OFCC1Q8IZS5 231 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 ZNF740Q8NDX6 193 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 OR2L5Q8NG80 312 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 VANGL1Q8TAA9 524 aaPredicted RBP11.08□□□□□ -0.64
VPS4A-201ENST00000254950 TEFMQ96QE5 360 aaKnown RBP11.08□□□□□ -0.64
VPS4A-201ENST00000254950 TRIM8Q9BZR9 551 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 EPHA6Q9UF33 1036 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 G3V2T6 193 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 PRKD3O94806 890 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 AGR2O95994 175 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 UQCRC2P22695 453 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 PSMA3P25788 255 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 PEX2P28328 305 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 TRIM23P36406 574 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 PGDP52209 483 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 ARHGAP40Q5TG30 622 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 OR52E8Q6IFG1 317 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 CCDC116Q8IYX3 515 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 OR2T11Q8NH01 316 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 EDAQ92838 391 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 MMABQ96EY8 250 aaPredicted RBP11.08□□□□□ -0.64
VPS4A-201ENST00000254950 YIPF4Q9BSR8 244 aa11.08□□□□□ -0.64
VPS4A-201ENST00000254950 H3BNH8 94 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 ARNTLO00327 626 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 RNH1P13489 461 aaKnown RBP11.07□□□□□ -0.64
VPS4A-201ENST00000254950 IL1RNP18510 177 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 FADDQ13158 208 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 TCTE1Q5JU00 501 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 OR2L3Q8NG85 312 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 GPR151Q8TDV0 419 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 GAL3ST3Q96A11 431 aa11.07□□□□□ -0.64
VPS4A-201ENST00000254950 RMND5BQ96G75 393 aaPredicted RBP11.07□□□□□ -0.64
VPS4A-201ENST00000254950 EGLN2Q96KS0 407 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms