RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MXD1Q05195 221 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ST3GAL3Q11203 375 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CAMK2DQ13557 499 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TAF1AQ15573 450 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 LRIT3Q3SXY7 679 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CGB2Q6NT52 195 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM205Q6UW68 189 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 JAZF1Q86VZ6 243 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 HOXD1Q9GZZ0 328 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 DPEP2Q9H4A9 486 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM248Q9NWD8 314 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PCDHA2Q9Y5H9 948 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF536O15090 1300 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 WASHC1A8K0Z3 465 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NPC1O15118 1278 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 FKTNO75072 461 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 DFFBO76075 338 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 UBL3O95164 117 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ARF4P18085 180 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NFYAP23511 347 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SLC25A11Q02978 314 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 MLLT1Q03111 559 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 UTS2BQ765I0 119 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 FAM83AQ86UY5 434 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SYT14Q8NB59 555 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 OR5T1Q8NG75 326 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PIGBQ92521 554 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF514Q96K75 400 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ELAC1Q9H777 363 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 GPRC5BQ9NZH0 403 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SPATA31C2B4DYI2 1134 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF26P17031 533 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CTRB1P17538 263 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 EVI2BP34910 448 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SERPINF1P36955 418 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 GLP1RP43220 463 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SCARB2Q14108 478 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NHSL2Q5HYW2 709 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CTRB2Q6GPI1 263 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 FBXL19Q6PCT2 694 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF783Q6ZMS7 281 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ESX1Q8N693 406 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CD300LFQ8TDQ1 290 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SEMA4CQ9C0C4 833 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NANSQ9NR45 359 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SACM1LQ9NTJ5 587 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 UNC119BA6NIH7 251 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 RNF212BA8MTL3 300 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ARVCFO00192 962 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CACNB4O00305 520 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 DDCP20711 480 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 BAG6P46379 1132 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 VLDLRP98155 873 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NFKB2Q00653 900 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CHAF1BQ13112 559 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CHRNA6Q15825 494 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PCK2Q16822 640 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PTPN20Q4JDL3 420 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF561Q8N587 486 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PNLDC1Q8NA58 520 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 BBS10Q8TAM1 723 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SMARCD2Q92925 531 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TBATAQ96M53 351 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 DCLRE1CQ96SD1 692 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 MYOCQ99972 504 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM185BQ9H7F4 350 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ZFP14Q9HCL3 533 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 WIF1Q9Y5W5 379 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 A0A0G2JLW4 131 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 METTL15A6NJ78 407 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 E9PI62 339 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 EEF1E1O43324 174 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 EBLN1P0CF75 366 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 JUNDP17535 347 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ADRA1BP35368 520 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 LASP1Q14847 261 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 MAD2L1BPQ15013 274 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TRAM2Q15035 370 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 STK11Q15831 433 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 DOK6Q6PKX4 331 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 GHDCQ8N2G8 530 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF454Q8N9F8 522 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM102Q8N9M5 508 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 OR52E4Q8NGH9 312 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 RNF141Q8WVD5 230 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PWWP2AQ96N64 755 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 DOHHQ9BU89 302 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 RAB11FIP5Q9BXF6 653 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 RBCK1Q9BYM8 510 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 MFFQ9GZY8 342 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CTPS2Q9NRF8 586 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ICKQ9UPZ9 632 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 GJA3Q9Y6H8 435 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 MEGF11A6BM72 1044 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 MBP02144 154 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PTPN1P18031 435 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CD53P19397 219 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms