RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 OR4Q3Q8NH05 313 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 KIR2DL5BQ8NHK3 375 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 RPLP0P6Q8NHW5 317 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 C9orf43Q8TAL5 461 aaPredicted RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 SPPL2AQ8TCT8 520 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 NPRL2Q8WTW4 380 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CHURC1Q8WUH1 139 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 GTSF1Q8WW33 167 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ITLN1Q8WWA0 313 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 KCNE4Q8WWG9 221 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ARHGAP45Q92619 1136 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 RAD54LQ92698 747 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TSACCQ96A04 125 aaPredicted RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 JAKMIP2Q96AA8 810 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PYCR2Q96C36 320 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 THOC1Q96FV9 657 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 CFAP57Q96MR6 1250 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TIGD1Q96MW7 591 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 GDAP1L1Q96MZ0 367 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 BTBD9Q96Q07 612 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TAAR6Q96RI8 345 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 SERINC2Q96SA4 455 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 NAP1L4Q99733 375 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 ATF6BQ99941 703 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ALKBH7Q9BT30 221 aaPredicted RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 SLC25A23Q9BV35 468 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CCDC106Q9BWC9 280 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CHMP4AQ9BY43 222 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 YTHDF1Q9BYJ9 559 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 TXLNGYQ9BZA5 131 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PLA2G12AQ9BZM1 189 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 FAM129AQ9BZQ8 928 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 MIS12Q9H081 205 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 SDCBP2Q9H190 292 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CCDC68Q9H2F9 335 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 JPT2Q9H910 190 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PDFQ9HBH1 243 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 B3GAT2Q9NPZ5 323 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PPANQ9NQ55 473 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 PIH1D3Q9NQM4 214 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 ANKEF1Q9NU02 776 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 NLGN3Q9NZ94 848 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CPSF2Q9P2I0 782 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 Q9UF83 564 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 IL36AQ9UHA7 158 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 DDX25Q9UHL0 483 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 LNPEPQ9UIQ6 1025 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 RPS6KA6Q9UK32 745 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 NOCTQ9UK39 431 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 CPSF3Q9UKF6 684 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 ITGA11Q9UKX5 1188 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ZNF346Q9UL40 294 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 CHKBQ9Y259 395 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TMEM5Q9Y2B1 443 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 SELENOKQ9Y6D0 94 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 IL16Q14005 1332 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 IGSF1Q8N6C5 1336 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 SALL1Q9NSC2 1324 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ITGB4P16144 1822 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 A0A0B4J203 849 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 TRGV8A0A0C4DH27 118 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 FAM168BA1KXE4 195 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 BCLAF3A2AJT9 711 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 GTPBP10A4D1E9 387 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 C5orf52A6NGY3 159 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ANKDD1BA6NHY2 528 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 RPL37AP8A6NKH3 93 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 FOXI3A8MTJ6 420 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 ZNF724A8MTY0 619 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 A8MVM7 634 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 B4DXG7 233 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ZNF732B4DXR9 585 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 PRSS46E5RG02 174 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 FAM86B1E9PN63 330 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 H0YIG0 161 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 K7ENM7 598 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SLC1A7O00341 560 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 P4HA2O15460 535 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 FLRT2O43155 660 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SH3BP5O60239 455 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 KIF5CO60282 957 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SELENOFO60613 162 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 TBX10O75333 385 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SH3BGRLO75368 114 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 CSDE1O75534 798 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 MTRF1O75570 445 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 RPS6KA5O75582 802 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 WDHD1O75717 1129 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 KBTBD11O94819 623 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SIX3O95343 332 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 POP4O95707 220 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 STARD3NLO95772 234 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 HPP00738 406 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MT-ND2P03891 347 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 DNTTP04053 509 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 THY1P04216 161 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ZFYP08048 801 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 FAM86B2P0C5J1 330 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ANKRD34CP0C6C1 535 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 CCDC159P0C7I6 412 aa0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms