RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 RND1Q92730 232 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 SNF8Q96H20 258 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 MAD1L1Q9Y6D9 718 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 MAP1AP78559 2803 aaPredicted RBP18.13■□□□□ 0.49
CLN3-262ENST00000637699 HCFC1P51610 2035 aa18.13■□□□□ 0.49
CLN3-262ENST00000637699 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.12■□□□□ 0.49
CLN3-262ENST00000637699 TCRBV16S1A1N1A0A5B0 115 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 TRBC2A0A5B9 178 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 FOXO6A8MYZ6 492 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 KRT14P02533 472 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 HIST1H2AGP0C0S8 130 aaPredicted RBP18.12■□□□□ 0.49
CLN3-262ENST00000637699 MLNP12872 115 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 HIST1H2ADP20671 130 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 RAB8AP61006 207 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 TIAL1Q01085 375 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLN3-262ENST00000637699 RGS1Q08116 209 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 HYAL2Q12891 473 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 SP140Q13342 867 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 KRTAP21-3Q3LHN1 58 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 HSP90AA5PQ58FG0 334 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 CATSPEREQ5SY80 951 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 PAQR3Q6TCH7 311 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 ABHD13Q7L211 337 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 MDGA2Q7Z553 956 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 TMEM200AQ86VY9 491 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 CCDC71Q8IV32 467 aaPredicted RBP18.12■□□□□ 0.49
CLN3-262ENST00000637699 LMNTD2Q8IXW0 634 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 CYP4Z2PQ8N1L4 340 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 RPRMLQ8N4K4 120 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 TMEM156Q8N614 296 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 OR4K1Q8NGD4 311 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 C16orf52Q8NHV5 167 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 HIST1H2AHQ96KK5 128 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 HIST1H2AJQ99878 128 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 H2AFJQ9BTM1 129 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 TP63Q9H3D4 680 aaPredicted RBP18.12■□□□□ 0.49
CLN3-262ENST00000637699 XAB2Q9HCS7 855 aaKnown RBP18.12■□□□□ 0.49
CLN3-262ENST00000637699 KCNJ16Q9NPI9 418 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 NECTIN3Q9NQS3 549 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 PRDM9Q9NQV7 894 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 IARS2Q9NSE4 1012 aaKnown RBP18.12■□□□□ 0.49
CLN3-262ENST00000637699 TNFRSF10DQ9UBN6 386 aa18.12■□□□□ 0.49
CLN3-262ENST00000637699 TRBV11-1A0A0K0K1C0 115 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 PSMD12O00232 456 aaPredicted RBP18.11■□□□□ 0.49
CLN3-262ENST00000637699 SLC16A5O15375 505 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 TOXO94900 526 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 NADKO95544 446 aaPredicted RBP18.11■□□□□ 0.49
CLN3-262ENST00000637699 CXCR5P32302 372 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 NR0B1P51843 470 aaKnown RBP18.11■□□□□ 0.49
CLN3-262ENST00000637699 TFF3Q07654 80 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 DHX9Q08211 1270 aaKnown RBP18.11■□□□□ 0.49
CLN3-262ENST00000637699 NIPAL1Q6NVV3 410 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 ARMC10Q8N2F6 343 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 AGGF1Q8N302 714 aaeCLIP18.11■□□□□ 0.49
CLN3-262ENST00000637699 TBC1D19Q8N5T2 526 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 OR52N2Q8NGI0 321 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 NT5CQ8TCD5 201 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 UTP15Q8TED0 518 aaKnown RBP18.11■□□□□ 0.49
CLN3-262ENST00000637699 LINGO1Q96FE5 620 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 SERPINB12Q96P63 405 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 OR4K3Q96R72 315 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 ZNF559Q9BR84 538 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 SARGQ9BW04 601 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 DEFB127Q9H1M4 99 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 SPNS1Q9H2V7 528 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 HOMER3Q9NSC5 361 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 ARL15Q9NXU5 204 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 TAS2R13Q9NYV9 303 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 ZFATQ9P243 1243 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 ZFP69BQ9UJL9 534 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 FBXW2Q9UKT8 454 aa18.11■□□□□ 0.49
CLN3-262ENST00000637699 NIPBLQ6KC79 2804 aaeCLIP18.11■□□□□ 0.49
CLN3-262ENST00000637699 IGKV3D-11A0A0A0MRZ8 115 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 CTAGE15A4D2H0 777 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 ITGA10O75578 1167 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 MYO1DO94832 1006 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 RNH1P13489 461 aaKnown RBP18.1■□□□□ 0.49
CLN3-262ENST00000637699 MSX1P28360 303 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 CLCN2P51788 898 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 PMPCAQ10713 525 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 CSHL1Q14406 222 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 DUPD1Q68J44 220 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 ARHGAP11AQ6P4F7 1023 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 CTAGE6Q86UF2 777 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 DMRTC2Q8IXT2 367 aaPredicted RBP18.1■□□□□ 0.49
CLN3-262ENST00000637699 ZFP62Q8NB50 900 aaPredicted RBP18.1■□□□□ 0.49
CLN3-262ENST00000637699 APCDD1LQ8NCL9 501 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 MCUQ8NE86 351 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 ARMC2Q8NEN0 867 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 NRGNQ92686 78 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 POM121Q96HA1 1249 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 FAM167BQ9BTA0 163 aa18.1■□□□□ 0.49
CLN3-262ENST00000637699 ZNF407Q9C0G0 2248 aa18.09■□□□□ 0.49
CLN3-262ENST00000637699 PABPN1LA6NDY0 278 aaKnown RBP18.09■□□□□ 0.49
CLN3-262ENST00000637699 SCTRP47872 440 aa18.09■□□□□ 0.49
CLN3-262ENST00000637699 CDKN2DP55273 166 aa18.09■□□□□ 0.49
CLN3-262ENST00000637699 EMC4Q5J8M3 183 aa18.09■□□□□ 0.49
CLN3-262ENST00000637699 TTC27Q6P3X3 843 aa18.09■□□□□ 0.49
CLN3-262ENST00000637699 STRA8Q7Z7C7 330 aa18.09■□□□□ 0.49
CLN3-262ENST00000637699 LRRC8AQ8IWT6 810 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms