RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 C4orf51C9J302 202 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 RFXANKO14593 260 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 ANXA6P08133 673 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 PVRP15151 417 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 TYRP1P17643 537 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 EFNA1P20827 205 aaPredicted RBP16.08■□□□□ 0.16
CLN3-252ENST00000636907 HNRNPFP52597 415 aaKnown RBP16.08■□□□□ 0.16
CLN3-252ENST00000636907 MAPK12P53778 367 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 MRPS22P82650 360 aaKnown RBP16.08■□□□□ 0.16
CLN3-252ENST00000636907 BNIP2Q12982 314 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 TEAD4Q15561 434 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 MUM1Q2TAK8 710 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 ZNF793Q6ZN11 406 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 IKBIPQ70UQ0 350 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 R3HCC1LQ7Z5L2 792 aaKnown RBP16.08■□□□□ 0.16
CLN3-252ENST00000636907 C17orf82Q86X59 251 aaPredicted RBP16.08■□□□□ 0.16
CLN3-252ENST00000636907 MMP21Q8N119 569 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 SDR16C5Q8N3Y7 309 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 AVL9Q8NBF6 648 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 TM4SF18Q96CE8 201 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 AURKBQ96GD4 344 aaPredicted RBP16.08■□□□□ 0.16
CLN3-252ENST00000636907 TEFMQ96QE5 360 aaKnown RBP16.08■□□□□ 0.16
CLN3-252ENST00000636907 C17orf62Q9BQA9 187 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 BHLHE41Q9C0J9 482 aaPredicted RBP16.08■□□□□ 0.16
CLN3-252ENST00000636907 PIF1Q9H611 641 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 ANKMY1Q9P2S6 941 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 EGFL7Q9UHF1 273 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 KLK4Q9Y5K2 254 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 USP34Q70CQ2 3546 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 A0A0J9YY10 115 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 PRSS51A0A1B0GVH4 220 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 TMPRSS11DO60235 418 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 CTSVO60911 334 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 FKBP9O95302 570 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 CPSF4O95639 269 aaKnown RBP16.07■□□□□ 0.16
CLN3-252ENST00000636907 ANPEPP15144 967 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 ATP6V1B2P21281 511 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 RPL3P39023 403 aaKnown RBP16.07■□□□□ 0.16
CLN3-252ENST00000636907 SSR2P43308 183 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 TRPC1P48995 793 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 SLC34A1Q06495 639 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 PRSS53Q2L4Q9 553 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 TOR1AIP1Q5JTV8 583 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 ANXA8L1Q5VT79 327 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 OGFOD3Q6PK18 319 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 CYP2R1Q6VVX0 501 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 ZNF438Q7Z4V0 828 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 ASPGQ86U10 573 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 SPATA24Q86W54 205 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 DHFR2Q86XF0 187 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 C1orf210Q8IVY1 113 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 GAB3Q8WWW8 586 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 PPCDCQ96CD2 204 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 CCDC115Q96NT0 180 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 GBP5Q96PP8 586 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 PANX1Q96RD7 426 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 DDX31Q9H8H2 851 aaKnown RBP16.07■□□□□ 0.16
CLN3-252ENST00000636907 TMEM74BQ9NUR3 256 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 ERVK-11Q9UQG0 969 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 CROCCQ5TZA2 2017 aa16.07■□□□□ 0.16
CLN3-252ENST00000636907 MDC1Q14676 2089 aaKnown RBP16.06■□□□□ 0.16
CLN3-252ENST00000636907 A0A0A6YYD5 115 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 A0A0J9YVX5 310 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 A0A1B0GTW7 788 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 H3BNX3 289 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 ERI3O43414 337 aaKnown RBP16.06■□□□□ 0.16
CLN3-252ENST00000636907 PRAMEF10O60809 474 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 UBXN7O94888 489 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 ANP32DO95626 131 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 CTSKP43235 329 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 SESN3P58005 492 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 BNC1Q01954 994 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 KLC1Q07866 573 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 ABHD17CQ6PCB6 329 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 PTRH1Q86Y79 214 aaKnown RBP16.06■□□□□ 0.16
CLN3-252ENST00000636907 OR2L5Q8NG80 312 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 ZUFSPQ96AP4 578 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 MTERF3Q96E29 417 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 OR2A5Q96R48 311 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 CPPED1Q9BRF8 314 aaPredicted RBP16.06■□□□□ 0.16
CLN3-252ENST00000636907 THUMPD3Q9BV44 507 aaKnown RBP16.06■□□□□ 0.16
CLN3-252ENST00000636907 SLC6A16Q9GZN6 736 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 ERVMER34-1Q9H9K5 563 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 UCK1Q9HA47 277 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 BTNL2Q9UIR0 455 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 PILRAQ9UKJ1 303 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 WBP11Q9Y2W2 641 aaKnown RBP16.06■□□□□ 0.16
CLN3-252ENST00000636907 SNX11Q9Y5W9 270 aa16.06■□□□□ 0.16
CLN3-252ENST00000636907 STAMBPO95630 424 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 SOX11P35716 441 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 OR4D2P58180 307 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 MPEG1Q2M385 716 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 ARMC6Q6NXE6 501 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 RNF111Q6ZNA4 994 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 C11orf74Q86VG3 221 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 TICAM1Q8IUC6 712 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 VPS37AQ8NEZ2 397 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 BAHD1Q8TBE0 780 aaPredicted RBP16.05■□□□□ 0.16
CLN3-252ENST00000636907 RSRC1Q96IZ7 334 aaKnown RBP16.05■□□□□ 0.16
CLN3-252ENST00000636907 ZNF583Q96ND8 569 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms